View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4536-Insertion-10 (Length: 103)

Name: NF4536-Insertion-10
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4536-Insertion-10
NF4536-Insertion-10
[»] chr1 (9 HSPs)
chr1 (12-103)||(17479333-17479424)
chr1 (7-78)||(17653964-17654035)
chr1 (7-78)||(14649827-14649898)
chr1 (7-78)||(14659617-14659688)
chr1 (7-78)||(29289597-29289668)
chr1 (7-77)||(16100298-16100368)
chr1 (7-52)||(47051085-47051130)
chr1 (10-74)||(10991747-10991811)
chr1 (64-103)||(17479960-17479999)
[»] chr4 (8 HSPs)
chr4 (10-103)||(11513331-11513424)
chr4 (7-78)||(4764065-4764136)
chr4 (11-78)||(18694739-18694806)
chr4 (10-78)||(27561730-27561798)
chr4 (15-76)||(27734297-27734358)
chr4 (11-75)||(51533219-51533283)
chr4 (10-77)||(54352410-54352477)
chr4 (22-78)||(5359192-5359248)
[»] chr3 (8 HSPs)
chr3 (7-78)||(6911902-6911973)
chr3 (7-78)||(28103368-28103439)
chr3 (7-52)||(19434585-19434630)
chr3 (10-78)||(28059024-28059092)
chr3 (10-78)||(28069449-28069517)
chr3 (11-77)||(5706111-5706177)
chr3 (10-52)||(9436751-9436793)
chr3 (10-51)||(11200272-11200313)
[»] chr6 (12 HSPs)
chr6 (10-78)||(25478836-25478904)
chr6 (7-78)||(33062575-33062646)
chr6 (7-78)||(9814366-9814437)
chr6 (7-78)||(27526793-27526864)
chr6 (10-78)||(22013523-22013591)
chr6 (7-91)||(28040240-28040323)
chr6 (10-53)||(27683674-27683717)
chr6 (10-53)||(27690995-27691038)
chr6 (31-78)||(9822206-9822253)
chr6 (14-53)||(17355060-17355099)
chr6 (10-77)||(27650597-27650668)
chr6 (14-52)||(13142723-13142761)
[»] scaffold0406 (1 HSPs)
scaffold0406 (7-78)||(3207-3278)
[»] chr8 (4 HSPs)
chr8 (10-78)||(26917861-26917929)
chr8 (7-78)||(15924490-15924561)
chr8 (7-78)||(18981973-18982044)
chr8 (10-78)||(4707223-4707291)
[»] chr2 (11 HSPs)
chr2 (10-78)||(10415399-10415467)
chr2 (10-76)||(9311875-9311941)
chr2 (10-78)||(809242-809310)
chr2 (10-78)||(44323631-44323699)
chr2 (7-70)||(45331561-45331624)
chr2 (7-52)||(2587734-2587779)
chr2 (10-51)||(4405483-4405524)
chr2 (10-78)||(39155231-39155299)
chr2 (10-53)||(31713521-31713564)
chr2 (12-78)||(4696178-4696244)
chr2 (32-78)||(15001313-15001359)
[»] scaffold0713 (1 HSPs)
scaffold0713 (7-78)||(341-412)
[»] chr7 (4 HSPs)
chr7 (10-78)||(28803113-28803181)
chr7 (14-76)||(22010790-22010852)
chr7 (10-51)||(44060601-44060642)
chr7 (10-77)||(36264961-36265028)
[»] chr5 (4 HSPs)
chr5 (10-78)||(42785042-42785110)
chr5 (10-77)||(5520045-5520112)
chr5 (12-91)||(27198883-27198961)
chr5 (14-66)||(15598153-15598205)
[»] scaffold0007 (1 HSPs)
scaffold0007 (14-51)||(60063-60100)
[»] scaffold0438 (1 HSPs)
scaffold0438 (22-78)||(8242-8298)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 3e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 17479333 - 17479424
Alignment:
Q  12 tacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaacaaattctcaaaacatctcacaaacca 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17479333 tacctaattgaaatcacatactaggtgcacctaggtcgtcgtcactaaaaccataattttcaaaacaaattctcaaaacgtcttacaaacca 17479424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 17653964 - 17654035
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  17653964 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaaca 17654035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 14649898 - 14649827
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||    
T  14649898 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 14649827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 14659688 - 14659617
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||    
T  14659688 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 14659617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 29289597 - 29289668
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||  |||| ||||||||||||||    
T  29289597 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattgtaaccgtaattttcaaaaca 29289668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 16100368 - 16100298
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaac 77  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||| | || |||||||||||||    
T  16100368 aattctacctgattgaaatcacatactaggtgcacctaggtcgtcgtcattatagccgtaattttcaaaac 16100298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 47051085 - 47051130
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtca 52  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  47051085 aattctacctaattaaaatcacatactaggtgcacctaggtcgtca 47051130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 10991747 - 10991811
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaa 74  Q
    ||||||||| ||| |||||||||||||||||| ||||||||| || ||| | || ||||||||||    
T  10991747 tctacctaactgatatcacatactaggtgcacttaggtcgtcgtcattatacccgtaattttcaa 10991811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 17479999 - 17479960
Alignment:
Q  64 ataattttcaaaacaaattctcaaaacatctcacaaacca 103  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  17479999 ataattttcaaaacaaattctcaaaacgtcttacaaacca 17479960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 11513331 - 11513424
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaacaaattctcaaaacatctcacaaacca 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||  |||| |||||||    
T  11513331 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaaattctcaaaatgtctcccaaacca 11513424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 4764065 - 4764136
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||    
T  4764065 aattctacctaattgaaatcacatactaggtgtacctaggtcgtcgtcattataaccataattttcaaaaca 4764136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 18694739 - 18694806
Alignment:
Q  11 ctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  18694739 ctacctaatcgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaaca 18694806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 27561730 - 27561798
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||| |||| ||||||||||||||    
T  27561730 tctacctaattgaaatcacatactaggtgcacctaggtcgacaccattataaccgtaattttcaaaaca 27561798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 27734297 - 27734358
Alignment:
Q  15 ctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaa 76  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||    
T  27734297 ctaattgaaatcacatactagatgcacctgggtcgtcatcattataaccataattttcaaaa 27734358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 51533283 - 51533219
Alignment:
Q  11 ctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaa 75  Q
    ||||||||| ||||||||||||||||||||||||||||||| |  ||| |||| |||||||||||    
T  51533283 ctacctaatcgaaatcacatactaggtgcacctaggtcgtcgttattataaccgtaattttcaaa 51533219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 54352410 - 54352477
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaac 77  Q
    |||||||||| |||||||||||||| |||||||||||||||  || ||| |||| |||||||||||||    
T  54352410 tctacctaatcgaaatcacatactatgtgcacctaggtcgttgtcattataaccgtaattttcaaaac 54352477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 5359192 - 5359248
Alignment:
Q  22 aaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||| ||||||||| || |||||| || ||| |||| ||||||||||||||    
T  5359192 aaatcacatagtaggtgcacgtatgtcgtcgtcattataaccgtaattttcaaaaca 5359248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 4e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 6911902 - 6911973
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  6911902 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaaca 6911973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 28103439 - 28103368
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||| |||||||||    
T  28103439 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaaca 28103368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 19434630 - 19434585
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtca 52  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  19434630 aattctacctaattgaaatcacatactaggtgcacctagatcgtca 19434585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 28059024 - 28059092
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||| ||||||||||| ||||||||||| || ||| |||| ||||||| ||||||    
T  28059024 tctacctaattgaaatcagatactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaaca 28059092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 28069449 - 28069517
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||| ||||||||||| ||||||||||| || ||| |||| ||||||| ||||||    
T  28069449 tctacctaattgaaatcagatactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaaca 28069517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 5706111 - 5706177
Alignment:
Q  11 ctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaac 77  Q
    ||||||||| ||| ||||||||||||||||||||||||||| || ||| || | |||||||||||||    
T  5706111 ctacctaatcgaagtcacatactaggtgcacctaggtcgtcgtcattataatcgtaattttcaaaac 5706177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 9436751 - 9436793
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtca 52  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  9436751 tctacctaaccgaaatcacatactaggtgcacctaggtcgtca 9436793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 11200313 - 11200272
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtc 51  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  11200313 tctacctaactgaaatcacatactaggtgcacctagttcgtc 11200272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 25478836 - 25478904
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  25478836 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaaca 25478904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 33062646 - 33062575
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||    
T  33062646 aattctacctaattgaaatcacatactaggtgcaactaggtcgtcgtcattataaccataattttcaaaaca 33062575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 9814437 - 9814366
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  9814437 aattctacctaaccgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaaca 9814366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 27526864 - 27526793
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||| |||||||||| || ||| |||| ||||||||||||||    
T  27526864 aattctacctaattgaaatcacatactaggtgcatctaggtcgtcgtcattataaccgtaattttcaaaaca 27526793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 22013591 - 22013523
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||  ||||||||||||||    
T  22013591 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaaca 22013523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 28040323 - 28040240
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaacaaattctcaaaaca 91  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||   |||||||||  ||||||||||||||    
T  28040323 aattctacctaattgaaatcacatactaggtgcacctagatcgtcgtcattataacc-ggattttcaaacaaaattctcaaaaca 28040240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 27683717 - 27683674
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcat 53  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  27683717 tctacctaattgaaaacacatactaggtgcacctaggtcgtcat 27683674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 27691038 - 27690995
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcat 53  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  27691038 tctacctaattgaaaacacatactaggtgcacctaggtcgtcat 27690995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 9822253 - 9822206
Alignment:
Q  31 actaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||| || ||| |||||||||||||||||||    
T  9822253 actaggtgcacctaggtcgtcgtcattataaccataattttcaaaaca 9822206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 17355099 - 17355060
Alignment:
Q  14 cctaattgaaatcacatactaggtgcacctaggtcgtcat 53  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  17355099 cctaattgaaaacacatactaggtgcacctaggtcgtcat 17355060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 27650668 - 27650597
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaa----aaccataattttcaaaac 77  Q
    |||||||||  ||||||||||||||||||||||||||||||| || ||||    |||| |||||||||||||    
T  27650668 tctacctaaccgaaatcacatactaggtgcacctaggtcgtcgtcattaattataaccgtaattttcaaaac 27650597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 13142723 - 13142761
Alignment:
Q  14 cctaattgaaatcacatactaggtgcacctaggtcgtca 52  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  13142723 cctacttgaattcacatactaggtgcacctaggtcgtca 13142761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 3278 - 3207
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||    
T  3278 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 3207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 26917861 - 26917929
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||||||    
T  26917861 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataatttttaaaaca 26917929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 15924561 - 15924490
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  15924561 aattctacctaaccgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaaca 15924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 18982044 - 18981973
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||| |||||||||    
T  18982044 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaaca 18981973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 4707223 - 4707291
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||| || ||||||||||||||||    
T  4707223 tctacctaattgaaatcacatactaggtacacctaggtcgtcgtcattataatcataattttcaaaaca 4707291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 10415467 - 10415399
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||    
T  10415467 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 10415399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-21
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 9311875 - 9311941
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaa 76  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  9311875 tctacctaatcgaaatcacatactaggtgcacctaggtcgtcatcattataaccgtaattttcaaaa 9311941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 809242 - 809310
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||| |||||||||    
T  809242 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaaca 809310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 44323699 - 44323631
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||  ||||||||||||||    
T  44323699 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaaca 44323631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 45331624 - 45331561
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||    
T  45331624 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtctttataaccgtaattt 45331561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 2587779 - 2587734
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtca 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2587779 aattctacctaattgaaatcacatactaggtgcacctaggtcgtca 2587734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 4405524 - 4405483
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtc 51  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4405524 tctacctaattgaaatcacatactaggtgcacctaggtcgtc 4405483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 39155231 - 39155299
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||| |||||||||||||||||||||||| |  | ||| |||| ||||||||||||||    
T  39155231 tctacctaattgaaaacacatactaggtgcacctaggtcgacgccattataaccgtaattttcaaaaca 39155299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 31713564 - 31713521
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcat 53  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  31713564 tctacctaattgaaaacacatactaggtgcacctaggtcgtcat 31713521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 4696244 - 4696178
Alignment:
Q  12 tacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||| |||||||||||||||||||| | ||||  | ||| |||||||||||||||||||    
T  4696244 tacctaattgaattcacatactaggtgcacctaagccgtcgccattataaccataattttcaaaaca 4696178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 15001313 - 15001359
Alignment:
Q  32 ctaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||| || ||| |||| ||||||||||||||    
T  15001313 ctaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 15001359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 412 - 341
Alignment:
Q  7 aattctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||    
T  412 aattctgcctaattgaaatcacatactaggtgtacctaggtcgtcgtcattataaccataattttcaaaaca 341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 28803181 - 28803113
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||| |||| ||||||||||||||    
T  28803181 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgccattataaccgtaattttcaaaaca 28803113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 22010852 - 22010790
Alignment:
Q  14 cctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaa 76  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||    
T  22010852 cctaatcgaaatcacatactaggtgcacctaggtcgtcatcattataactgtaattttcaaaa 22010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 44060601 - 44060642
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtc 51  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44060601 tctacctaattgaaatcacatactaggtgcacctaggtcgtc 44060642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 36264961 - 36265028
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaac 77  Q
    ||||||||||||||||||||||||||||| |||||||||||| || ||| ||   |||||||||||||    
T  36264961 tctacctaattgaaatcacatactaggtgaacctaggtcgtcgtcattataattgtaattttcaaaac 36265028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 42785110 - 42785042
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||| |||||||||    
T  42785110 tctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaaca 42785042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 5520045 - 5520112
Alignment:
Q  10 tctacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaac 77  Q
    |||||||||| ||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||    
T  5520045 tctacctaatcgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaac 5520112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 27198883 - 27198961
Alignment:
Q  12 tacctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaacaaattctcaaaaca 91  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||   |||||||||  ||||||||||||||    
T  27198883 tacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataacc-ggattttcaaacaaaattctcaaaaca 27198961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 15598205 - 15598153
Alignment:
Q  14 cctaattgaaatcacatactaggtgcacctaggtcgtcatcgttaaaaccata 66  Q
    |||| |||||||||| |||||||||||||||||||||| || ||| |||||||    
T  15598205 cctatttgaaatcacgtactaggtgcacctaggtcgtcgtcattataaccata 15598153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 60100 - 60063
Alignment:
Q  14 cctaattgaaatcacatactaggtgcacctaggtcgtc 51  Q
    |||||| |||||||||||||||||||||||||||||||    
T  60100 cctaatcgaaatcacatactaggtgcacctaggtcgtc 60063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 8242 - 8298
Alignment:
Q  22 aaatcacatactaggtgcacctaggtcgtcatcgttaaaaccataattttcaaaaca 78  Q
    |||||||||||||||||||||||||||||| || ||| |||| | |||| |||||||    
T  8242 aaatcacatactaggtgcacctaggtcgtcgtccttataaccgtcatttacaaaaca 8298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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