View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4536-Insertion-2 (Length: 570)

Name: NF4536-Insertion-2
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4536-Insertion-2
NF4536-Insertion-2
[»] chr4 (19 HSPs)
chr4 (8-567)||(54501390-54501950)
chr4 (250-319)||(20627535-20627604)
chr4 (258-319)||(23089269-23089330)
chr4 (250-319)||(31914531-31914600)
chr4 (259-319)||(12206772-12206832)
chr4 (251-319)||(20628330-20628398)
chr4 (259-319)||(31135178-31135238)
chr4 (260-319)||(34978352-34978411)
chr4 (258-319)||(23088284-23088345)
chr4 (248-311)||(42523218-42523281)
chr4 (255-317)||(41164164-41164226)
chr4 (251-320)||(42523877-42523946)
chr4 (259-319)||(12210918-12210978)
chr4 (259-319)||(31689185-31689245)
chr4 (259-319)||(34837971-34838031)
chr4 (247-319)||(48314375-48314447)
chr4 (260-319)||(34836758-34836817)
chr4 (281-319)||(31908375-31908413)
chr4 (259-300)||(31135898-31135939)
[»] chr6 (12 HSPs)
chr6 (8-181)||(29374398-29374569)
chr6 (250-319)||(19237594-19237663)
chr6 (248-308)||(17279903-17279963)
chr6 (255-319)||(5860558-5860622)
chr6 (259-311)||(17280699-17280751)
chr6 (255-319)||(25359507-25359571)
chr6 (260-319)||(8238077-8238136)
chr6 (269-319)||(8683866-8683916)
chr6 (250-304)||(10792506-10792560)
chr6 (250-319)||(10793570-10793639)
chr6 (250-304)||(7001764-7001818)
chr6 (255-311)||(29375039-29375095)
[»] chr1 (11 HSPs)
chr1 (11-181)||(16802417-16802585)
chr1 (247-319)||(16801981-16802053)
chr1 (247-319)||(17238605-17238677)
chr1 (247-319)||(17239394-17239466)
chr1 (259-319)||(42026904-42026964)
chr1 (259-319)||(42031693-42031753)
chr1 (248-319)||(16802671-16802742)
chr1 (253-320)||(34361217-34361284)
chr1 (250-304)||(34269075-34269129)
chr1 (250-304)||(34275310-34275364)
chr1 (250-319)||(34267984-34268053)
[»] chr7 (12 HSPs)
chr7 (63-148)||(27257896-27257981)
chr7 (63-148)||(27268025-27268110)
chr7 (257-319)||(5997609-5997671)
chr7 (258-319)||(41970896-41970957)
chr7 (250-319)||(45551006-45551075)
chr7 (250-319)||(45551796-45551865)
chr7 (259-319)||(5995261-5995321)
chr7 (251-311)||(27268234-27268294)
chr7 (255-319)||(28778095-28778159)
chr7 (250-311)||(27258098-27258160)
chr7 (281-319)||(1409384-1409422)
chr7 (281-319)||(38887339-38887377)
[»] chr2 (5 HSPs)
chr2 (253-320)||(29558159-29558225)
chr2 (250-319)||(18767560-18767629)
chr2 (258-319)||(9244252-9244313)
chr2 (249-320)||(5483904-5483975)
chr2 (250-300)||(16591517-16591567)
[»] chr3 (10 HSPs)
chr3 (253-319)||(40929851-40929917)
chr3 (259-319)||(54285815-54285875)
chr3 (253-319)||(27359829-27359895)
chr3 (259-319)||(4300941-4301001)
chr3 (259-319)||(17619144-17619204)
chr3 (247-319)||(51341882-51341954)
chr3 (264-319)||(28422850-28422905)
chr3 (259-311)||(17615038-17615090)
chr3 (251-319)||(27317467-27317535)
chr3 (279-319)||(29032824-29032864)
[»] chr5 (3 HSPs)
chr5 (250-319)||(33471173-33471242)
chr5 (269-311)||(22671622-22671664)
chr5 (251-304)||(33471845-33471898)
[»] chr8 (8 HSPs)
chr8 (257-317)||(32744020-32744080)
chr8 (250-319)||(30971293-30971362)
chr8 (250-319)||(30971997-30972066)
chr8 (259-319)||(16101531-16101591)
chr8 (259-319)||(16106024-16106084)
chr8 (259-319)||(16113264-16113324)
chr8 (250-319)||(1636856-1636925)
chr8 (247-319)||(5152441-5152513)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Original strand, 54501390 - 54501950
Alignment:
Q  8 ccttttctgtgtacaactgaaaccgaaaacatgattggaagaaagaaatcgaaagctcatgagacttcaagagaagagagattgatgattagaaaactaa 107  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54501390 ccttttctgtgtaaaactgaaaccgaaaacatgattggaaaaaagaaatcgaaagctcatgagatttcaagagaagagagattgatgattagaaaactaa 54501489  T
Q  108 aacacaaataaagtggtgagggaagagggataacaaaaactcagataaaaagtgcgtgatacgagataccaaaggaccttnnnnnnnnt-taataattac 206  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||          ||| ||||||    
T  54501490 aacacaaataaagtggtgagggaagagagataacaaaaactcagataaaaagtgcgtgatacaagataccaaaggaccttaaaaaaaaactaacaattac 54501589  T
Q  207 atttgtgtcctttgattttaattggtccnnnnnnnnnnnncatgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaat 306  Q
    ||||||||||||||||||||||||||||            |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54501590 atttgtgtcctttgattttaattggtccaaaaaacaaaaacatgagtctttttgtccaagtaaaaatgtgttggttgctaaattagaccttcataaaaat 54501689  T
Q  307 gagtgagtctattaaagttatttagagtttaaattcaaattgtttgttctcgacaaatgagattatatgttttgaaagacaacttatgtattttaacata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54501690 gagtgagtctattaaagttatttagagtttaaattcaaattgtttgttctcgacaaatgagattatatgttttgaaagacaacttatgtattttaacata 54501789  T
Q  407 cactttgtaaacgtatatttattaaaagacttaaacataaatggttcataaaaagaaaagtattttaaaacctataaacataattcaaaccccttttctt 506  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54501790 cactttgtaaacgcatatttattaaaagacttaaacataaatggttcataaaaagaaaagtattttaaaaactataaacataattcaaaccccttttctt 54501889  T
Q  507 gtgtttcttccttttcatttggaattagagctctggccacctaatctccattgtcttcgct 567  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||| ||||    
T  54501890 gtgtttcttccttttcaattggtattagagctgtggccacctaaactccattgtctccgct 54501950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 20627604 - 20627535
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||| ||||| |||||||||| |||||||    
T  20627604 gggtctttgtgtccaagtgaaaaggtgttgggtgctaaaatagactttcatgaaaatgagtgggtctatt 20627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 23089269 - 23089330
Alignment:
Q  258 ttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||||| |||||||||||||||||||| ||||||| ||| |||||||||| |||||||    
T  23089269 ttgtccaagtgaaaaggtgttggttgctaaaatagacctacatgaaaatgagtgggtctatt 23089330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 31914600 - 31914531
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| ||||||||| |||||||| ||||||||||| |||| |||||| |||||||||| |||||||    
T  31914600 gggtctttgtgtccaagtgaaaaggtgctggttgctaaaatagatcttcatgaaaatgagtgggtctatt 31914531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 12206832 - 12206772
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| ||||||||  |||||||||| |||||||||||||||||||||| |||||||    
T  12206832 tgtccaagtgaaaaggtgcaggttgctaaaatagaccttcataaaaatgagtgggtctatt 12206772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 20628330 - 20628398
Alignment:
Q  251 ggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||||||| ||| ||||||||||| ||| |||| |||||||||||||||||| ||| |||||||    
T  20628330 ggtctttttgtcctagtgaaaaggtgttgcttggtaaaatagaccttcataaaaatgggtgggtctatt 20628398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 31135238 - 31135178
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||||||  |||||||    
T  31135238 tgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagttggtctatt 31135178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 34978411 - 34978352
Alignment:
Q  260 gtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||| | ||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  34978411 gtccaattgaaaaggtgttggttgataaaatagaccttcataaaaatgagtgggtctatt 34978352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 23088345 - 23088284
Alignment:
Q  258 ttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||| |||| | |||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  23088345 ttgtcgaagtgagaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 23088284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 42523281 - 42523218
Alignment:
Q  248 atgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtg 311  Q
    ||||||||||| |||||| | ||||||||||  ||||||||  |||||||||||||||||||||    
T  42523281 atgggtcttttggtccaaatgaaaaggtgttacttgctaaaagagaccttcataaaaatgagtg 42523218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 41164164 - 41164226
Alignment:
Q  255 tttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtcta 317  Q
    |||| |||||||| |||| ||||||||||||||| ||||| ||||||||||||| || |||||    
T  41164164 ttttagtccaagtgaaaatgtgttggttgctaaaatagactttcataaaaatgaatgggtcta 41164226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 42523877 - 42523946
Alignment:
Q  251 ggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatta 320  Q
    |||| ||| |||||||| ||||||||||  ||||||||  |||| ||||| |||||||||||||||||||    
T  42523877 ggtcatttggtccaagtgaaaaggtgttacttgctaaaacagactttcatgaaaatgagtgagtctatta 42523946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 12210918 - 12210978
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| ||||||||  |||||||||| ||||||||||| |||||||||  |||||||    
T  12210918 tgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagttggtctatt 12210978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 31689245 - 31689185
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||| ||| ||||||||  |||||||||| ||||||||||| |||||||||| |||||||    
T  31689245 tgtccgagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 31689185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 34837971 - 34838031
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| | |||| ||||||||||||||| || | ||||||||||||||||| |||||||    
T  34837971 tgtccaattgaaaaagtgttggttgctaaaataaaacttcataaaaatgagtgggtctatt 34838031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 48314447 - 48314375
Alignment:
Q  247 catgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| |||| ||| || | ||||||||||| |||||||| ||||| ||||| |||||||||| |||||||    
T  48314447 catgggtattttagtctaaatgaaaaggtgttgcttgctaaaatagactttcatgaaaatgagtgggtctatt 48314375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 34836817 - 34836758
Alignment:
Q  260 gtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||| | ||||| ||||||||| |||| ||||||||||||||||| |||| |||||||    
T  34836817 gtccaattgaaaagatgttggttgataaaatagaccttcataaaaataagtgggtctatt 34836758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 31908375 - 31908413
Alignment:
Q  281 ttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  31908375 ttgctaaaatagaccttcataaaaatgagtgggtctatt 31908413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 31135898 - 31135939
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcat 300  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  31135898 tgtccaagtgaaaaggtgttggttgctaaaatacaccttcat 31135939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 29374569 - 29374398
Alignment:
Q  8 ccttttctgtgtacaactgaaaccgaaaacatgattggaagaaagaaatcgaaagctcat---gagacttcaagagaagagagattgatgattagaaaac 104  Q
    ||||||||||||| |||| ||| ||||||||| |||| || |||||||||||||| ||||   |||| |||||||||||||||||||  |    ||||||    
T  29374569 ccttttctgtgtaaaactaaaatcgaaaacataattgaaaaaaagaaatcgaaagttcatcatgagatttcaagagaagagagattgcag----gaaaac 29374474  T
Q  105 taaaacacaaataaagtggtgagggaagagggataacaaaaactcagataaaaagtgcgtgatacgagataccaaag 181  Q
    ||||||||| | |||||| ||||||||||||||| ||||||||||||| |||||  ||  |||||||||||||||||    
T  29374473 taaaacacagagaaagtgatgagggaagagggatgacaaaaactcagagaaaaa-cgctagatacgagataccaaag 29374398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 19237594 - 19237663
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  19237594 gggtctttatgtccaagtgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 19237663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 17279963 - 17279903
Alignment:
Q  248 atgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatga 308  Q
    |||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  17279963 atgggtatttgtgtccaagtaaaaaggtgctggttgctaaaatagaccttcataaaaatga 17279903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 5860622 - 5860558
Alignment:
Q  255 tttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||||| | |||| ||||| ||||||||| || ||||||||||||||||||| |||||||    
T  5860622 tttttgtccaaatgaaaatgtgtttgttgctaaaatacaccttcataaaaatgagtgggtctatt 5860558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 17280699 - 17280751
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtg 311  Q
    ||||||||| |||||||||||||||||||| |||||||| || ||||||||||    
T  17280699 tgtccaagtgaaaaggtgttggttgctaaaatagaccttaatgaaaatgagtg 17280751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 25359571 - 25359507
Alignment:
Q  255 tttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||| |||||| |||||||||||||||||||||| ||||| |||||||||   ||||||||||||    
T  25359571 ttttggtccaaataaaaaggtgttggttgctaaaatagactttcataaaatgaagtgagtctatt 25359507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 8238136 - 8238077
Alignment:
Q  260 gtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||| | ||||||||||||||| || | ||||| ||||||||||||||||||||||||    
T  8238136 gtccaattgaaaaggtgttggttgatagaatagactttcataaaaatgagtgagtctatt 8238077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 8683866 - 8683916
Alignment:
Q  269 aaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||| |||||||||||||| ||||||||||| |||||||||| |||||||    
T  8683866 aaaagatgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 8683916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 10792560 - 10792506
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaa 304  Q
    |||||||| ||||||| | ||||||||||| |||||||| |||||||||||||||    
T  10792560 gggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaa 10792506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 10793570 - 10793639
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||| ||| ||||||||| ||||||||||| |||||||| |||||||| ||||||  ||||| |||||||    
T  10793570 gggtttttgtgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctatt 10793639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 7001764 - 7001818
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaa 304  Q
    ||||| || ||||||||| |||||||||||  ||||||| |||||||||||||||    
T  7001764 gggtcattgtgtccaagtgaaaaggtgttgcatgctaaaatagaccttcataaaa 7001818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 29375039 - 29375095
Alignment:
Q  255 tttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtg 311  Q
    ||||||||||||| |||||||| |  |||||||| | ||||||||| ||||||||||    
T  29375039 tttttgtccaagtgaaaaggtgctccttgctaaaatggaccttcatgaaaatgagtg 29375095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 16802417 - 16802585
Alignment:
Q  11 tttctgtgtacaactgaaaccgaaaacatgattggaagaaagaaatcgaaagctcat---gagacttcaagagaagagagattgatgattagaaaactaa 107  Q
    |||||||||| |||| ||| ||||||||| |||| || |||||||| ||||||||||   |||| |||||||||||||||||||  |    |||||||||    
T  16802417 tttctgtgtaaaactaaaatcgaaaacataattgaaaaaaagaaattgaaagctcatcatgagatttcaagagaagagagattgcag----gaaaactaa 16802512  T
Q  108 aacacaaataaagtggtgagggaagagggataacaaaaactcagataaaaagtgcgtgatacgagataccaaag 181  Q
    |||||| | |||||| ||||||||||||||| ||||||||||||| |||||  ||  |||||||||||||||||    
T  16802513 aacacagagaaagtgatgagggaagagggatgacaaaaactcagagaaaaa-cgctagatacgagataccaaag 16802585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 16802053 - 16801981
Alignment:
Q  247 catgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| ||||||||||||| ||||||||    |||||||| ||||||||||| |||||||||| |||||||    
T  16802053 catgggtatttttgtccaagtgaaaaggtgccccttgctaaaatagaccttcatgaaaatgagtgggtctatt 16801981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 17238677 - 17238605
Alignment:
Q  247 catgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||||||| ||||||   |||||||| |  |||||||| |||||||||||||||||||||| |||||||    
T  17238677 catgggtcttttggtccaaacgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctatt 17238605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 17239394 - 17239466
Alignment:
Q  247 catgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| |||| |||||| | |||||||| |  |||||||| |||||||||||||||||||||| |||||||    
T  17239394 catgggttttttggtccaaatgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctatt 17239466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 42026964 - 42026904
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| ||||||||  |||||||||| ||||||||||| |||||||||| |||||||    
T  42026964 tgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 42026904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 42031693 - 42031753
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| ||||||||  |||||||||| ||||||||||| |||||||||| |||||||    
T  42031693 tgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 42031753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 16802671 - 16802742
Alignment:
Q  248 atgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| |||||||||||| |||||||  |  |||||||| |||||||| ||||||||||||| |||||||    
T  16802671 atgggtccttttgtccaagtgaaaaggtacttcttgctaaaatagacctttataaaaatgagtgggtctatt 16802742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 34361284 - 34361217
Alignment:
Q  253 tctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatta 320  Q
    |||| |||||||||| |||||| ||||||||||||| || |||||||||||||| ||||  |||||||    
T  34361284 tcttcttgtccaagtcaaaaggcgttggttgctaaaataaaccttcataaaaataagtggttctatta 34361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 34269075 - 34269129
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaa 304  Q
    |||||||| ||||||| | ||||||||||| |||||||| |||||||||||||||    
T  34269075 gggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaa 34269129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 34275310 - 34275364
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaa 304  Q
    |||||||| ||||||| | ||||||||||| |||||||| |||||||||||||||    
T  34275310 gggtctttgtgtccaaatgaaaaggtgttgcttgctaaaatagaccttcataaaa 34275364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 34268053 - 34267984
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||| ||| ||||||||| ||||||||||| |||||||| |||||||| ||||||  ||||| |||||||    
T  34268053 gggtttttgtgtccaagtgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctatt 34267984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 27257896 - 27257981
Alignment:
Q  63 ctcatgagacttcaagagaagagagattgatgattagaaaactaaaacacaaataaagtggtgagggaagagggataacaaaaact 148  Q
    |||| |||| |||||||||||| |||||| |||||||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  27257896 ctcaagagatttcaagagaagatagattgttgattagaaaagaaaaacacagagaaagtggtgagggaagagggataacaaaaact 27257981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 27268025 - 27268110
Alignment:
Q  63 ctcatgagacttcaagagaagagagattgatgattagaaaactaaaacacaaataaagtggtgagggaagagggataacaaaaact 148  Q
    |||| |||| |||||||||||| |||||| |||||||||||  |||||||| | ||| ||||||||||||||||||||||||||||    
T  27268025 ctcaggagatttcaagagaagatagattgttgattagaaaagaaaaacacagagaaaatggtgagggaagagggataacaaaaact 27268110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 5997609 - 5997671
Alignment:
Q  257 tttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  5997609 tttgtccaagtgaaaaggtgctggttgctaaaatagaccttcatgaaaatgagtgggtctatt 5997671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 41970957 - 41970896
Alignment:
Q  258 ttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||||| |||||||||||||||||||| |||| |||||| |||||||||| |||||||    
T  41970957 ttgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaatgagtgggtctatt 41970896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 45551075 - 45551006
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||||||| || | |||||||||||||||||||| ||||||||||| ||| |||||| |||||||    
T  45551075 gggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctatt 45551006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 45551796 - 45551865
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||||||| || | |||||||||||||||||||| ||||||||||| ||| |||||| |||||||    
T  45551796 gggtctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctatt 45551865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 5995321 - 5995261
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| | |||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  5995321 tgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctatt 5995261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 27268234 - 27268294
Alignment:
Q  251 ggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtg 311  Q
    ||||||| ||||||||| |||||||| || |||||||| ||||||||||| ||||||||||    
T  27268234 ggtctttatgtccaagtgaaaaggtgctgattgctaaaatagaccttcatgaaaatgagtg 27268294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 28778095 - 28778159
Alignment:
Q  255 tttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||||||  |||||||||||||| |||||| |||||||| || |||||||||| |||||||    
T  28778095 tttttgtccaaagaaaaaggtgttggtcgctaaaatagaccttgatgaaaatgagtgggtctatt 28778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 27258098 - 27258160
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattaga-ccttcataaaaatgagtg 311  Q
    |||||||| ||||||||| ||||||||||| |||||||| |||| ||||||| ||||||||||    
T  27258098 gggtctttatgtccaagtgaaaaggtgttgattgctaaaatagacccttcatgaaaatgagtg 27258160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 1409422 - 1409384
Alignment:
Q  281 ttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  1409422 ttgctaaaatagaccttcataaaaatgagtgggtctatt 1409384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 38887377 - 38887339
Alignment:
Q  281 ttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  38887377 ttgctaaaatagaccttcatgaaaatgagtgagtctatt 38887339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 29558225 - 29558159
Alignment:
Q  253 tctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatta 320  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  29558225 tctttgtgtccaagtaaaaaggtgttggttgctaaa-tagaccttcataaaaatgagtgggtctatta 29558159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 18767560 - 18767629
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| |||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  18767560 gggtctttgtgtctaagtgaaaaggtgttggttgctaaaatagacctttataaaaatgagtgagtctatt 18767629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 9244313 - 9244252
Alignment:
Q  258 ttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| | |||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  9244313 ttgtccaactgaaaaggtgttggatgctaaaatagaccttcataaaaatgagtgggtctatt 9244252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 5483904 - 5483975
Alignment:
Q  249 tgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatta 320  Q
    ||||| ||||||||||| | |||||||||||| ||||||| |||||||| || |||||||||  ||||||||    
T  5483904 tgggtgtttttgtccaattgaaaaggtgttggatgctaaaatagacctttatgaaaatgagttggtctatta 5483975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 16591517 - 16591567
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcat 300  Q
    |||| ||| ||||||||| |||||||||||||||||||| |||||||||||    
T  16591517 gggtttttgtgtccaagtgaaaaggtgttggttgctaaaatagaccttcat 16591567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 40929851 - 40929917
Alignment:
Q  253 tctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||| |||||| | |||||||||||||||||||| || ||||||||||||||||||| |||||||    
T  40929851 tcttttcgtccaaatgaaaaggtgttggttgctaaaataaaccttcataaaaatgagtgggtctatt 40929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 54285815 - 54285875
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| | ||||||||| |||||||||| |||||||||||||||||||||| |||||||    
T  54285815 tgtccaaatgaaaaggtgtaggttgctaaaatagaccttcataaaaatgagtgggtctatt 54285875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 27359829 - 27359895
Alignment:
Q  253 tctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| || ||| ||||||||||| |||||||| ||||||||||| |||||||||| |||||||    
T  27359829 tctttttggcctagtgaaaaggtgttgtttgctaaaatagaccttcatgaaaatgagtgggtctatt 27359895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 4301001 - 4300941
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| |||||||||||||||||||| |||| |||||| ||||| |||| |||||||    
T  4301001 tgtccaagtgaaaaggtgttggttgctaaaatagatcttcatgaaaataagtgggtctatt 4300941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 17619144 - 17619204
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||| |||||||    
T  17619144 tgtccaagtgaaaaggtactggttgctaaaatagaccttcatgaaaatgagtgggtctatt 17619204  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 51341954 - 51341882
Alignment:
Q  247 catgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||| || |||| ||||||||||||||||||||| |||| ||||||||||| | |||||||  |||||||    
T  51341954 catgggtattcttgttcaagtaaaaaggtgttggttgttaaaatagaccttcatgagaatgagtaggtctatt 51341882  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 28422850 - 28422905
Alignment:
Q  264 aagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||| |||||||| ||||||||||| ||||| |||||||||||||||| |||||||    
T  28422850 aagtgaaaaggtgatggttgctaaaatagactttcataaaaatgagtgggtctatt 28422905  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 17615090 - 17615038
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtg 311  Q
    ||||||||| ||||||||   ||||||||| ||||||||||||||||||||||    
T  17615090 tgtccaagtgaaaaggtgcaagttgctaaaatagaccttcataaaaatgagtg 17615038  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 27317467 - 27317535
Alignment:
Q  251 ggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||| |||||||| | | ||||||||||| |||||||| || |||||||| |||||||| | |||||||    
T  27317467 ggtcgttttgtcctaatgaaaaggtgttgcttgctaaaataaaccttcatgaaaatgagcgggtctatt 27317535  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 29032824 - 29032864
Alignment:
Q  279 ggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||||| ||||||||||||||||||| || |||||||    
T  29032824 ggttgctaaaatagaccttcataaaaatgaatgggtctatt 29032864  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 33471242 - 33471173
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| ||||||| | |||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  33471242 gggtctttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgaatgggtctatt 33471173  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 22671664 - 22671622
Alignment:
Q  269 aaaaggtgttggttgctaaattagaccttcataaaaatgagtg 311  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||    
T  22671664 aaaaggtgttggttgttaaaatagaccttcatgaaaatgagtg 22671622  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 33471845 - 33471898
Alignment:
Q  251 ggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaa 304  Q
    |||||||| |||||| | |||||||| | ||||||||| |||||||||||||||    
T  33471845 ggtcttttagtccaaatgaaaaggtgctagttgctaaaatagaccttcataaaa 33471898  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 32744080 - 32744020
Alignment:
Q  257 tttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtcta 317  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  32744080 tttgtccacgtgaaaaggtgttggttgctaaaatagaccttcataaaaatgaataagtcta 32744020  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 30971362 - 30971293
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||| ||| ||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  30971362 gggtttttgtgtccaagtgaaaaagtgatggttgctaaaatagaccttcatgaaaatgagtgggtctatt 30971293  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 30971997 - 30972066
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||| ||| ||||||| | |||||||||||||||||||| ||||||||||| ||| |||||| |||||||    
T  30971997 gggtttttgtgtccaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctatt 30972066  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 16101591 - 16101531
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| ||||||||  |||||||||| ||||||||||| |||||||||| |||||||    
T  16101591 tgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgtgtctatt 16101531  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 16106024 - 16106084
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| ||||||||  |||||||||| ||||||||||| |||||||||| |||||||    
T  16106024 tgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 16106084  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 16113264 - 16113324
Alignment:
Q  259 tgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||||||| ||||||||  |||||||||| ||||||||||| |||||||||| |||||||    
T  16113264 tgtccaagtgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctatt 16113324  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 1636925 - 1636856
Alignment:
Q  250 gggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    |||||||| ||||||| | ||||| |||||||||| ||| |||| |||||| ||||||||||| ||||||    
T  1636925 gggtctttgtgtccaaatgaaaagatgttggttgcaaaaatagatcttcatgaaaatgagtgaatctatt 1636856  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 5152441 - 5152513
Alignment:
Q  247 catgggtctttttgtccaagtaaaaaggtgttggttgctaaattagaccttcataaaaatgagtgagtctatt 319  Q
    ||||| |||||| |||||| | ||||||||    |||||||| |||||||||||||||||||| | |||||||    
T  5152441 catggatcttttggtccaaatgaaaaggtgccacttgctaaaatagaccttcataaaaatgagcgggtctatt 5152513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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