View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536-Insertion-4 (Length: 404)
Name: NF4536-Insertion-4
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 26400606 - 26400796
Alignment:
| Q |
32 |
ttgaaataatgaaattgtaatcacagtaagtaacaacataccattctcatttgaagtagtttggatgtttgcgtagtacttccacctactcaatagttaa |
131 |
Q |
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| T |
26400606 |
ttgaaataatgaaattgtaatcacagtaagtaacaacataccattctcatttgaagtagtttggatggttgcgtagtacttccaccttctcaatagttaa |
26400705 |
T |
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| Q |
132 |
gaatggtggtgaatcctcttaacacccaatcaaaatcatcatctttaagtgtttcaaagttgataaggttataattttgtttacttattcc |
222 |
Q |
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| T |
26400706 |
gaatggtggtgaatcctcctaacacccaatcaaaatcatcatctttaagtatttcaaagttgataaggttataattttgtttacttattcc |
26400796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 26400864 - 26400943
Alignment:
| Q |
290 |
acatcccaacagtagtattttgtagccttaaattgtaacgatgacaagatcattaagcttttgatgctccaacctataac |
369 |
Q |
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| T |
26400864 |
acatcccaacagtagtattttgtagccttaaattgtaacgatgacaagatcattaagcttttgatgctccaacctataac |
26400943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 26400543 - 26400589
Alignment:
| Q |
8 |
attcggaccatatatccaaacgaattgaaataatgaaattgtaatca |
54 |
Q |
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| T |
26400543 |
attcggaccatatatccaaacgaattgaaataatgaaattgtaatca |
26400589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 35036750 - 35036645
Alignment:
| Q |
104 |
gtagtacttccacctactcaatagttaagaatggtggtgaatcctcttaacacccaatcaaaatcatcatctttaagtgtttcaaagttgataaggttat |
203 |
Q |
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| T |
35036750 |
gtagtacttccaactcctcgatggttaagaatggtggtgaatcctccgg-cacccgatcaaaatcatcatcttcaagtgtttcaaagttgatagggtcat |
35036652 |
T |
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| Q |
204 |
aattttg |
210 |
Q |
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||||||| |
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| T |
35036651 |
aattttg |
35036645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 366
Target Start/End: Original strand, 30826230 - 30826258
Alignment:
| Q |
338 |
atcattaagcttttgatgctccaacctat |
366 |
Q |
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| T |
30826230 |
atcattaagcttttgatgctccaacctat |
30826258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 12037568 - 12037678
Alignment:
| Q |
99 |
tttgcgtagtacttccacctactcaatagttaagaatggtggtgaatcctcttaacacccaatcaaaatcatcatctttaagtgtttcaaagttgataag |
198 |
Q |
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| T |
12037568 |
tttgcgtagtgcttccaaatcttcaaaagttaagaatggtggtgaatcctc-caacacccaatcttcataatcctcttcaagtgtttcaaaattgataag |
12037666 |
T |
|
| Q |
199 |
gttataattttg |
210 |
Q |
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|| ||||||||| |
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| T |
12037667 |
gtcataattttg |
12037678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 20655387 - 20655277
Alignment:
| Q |
99 |
tttgcgtagtacttccacctactcaatagttaagaatggtggtgaatcctcttaacacccaatcaaaatcatcatctttaagtgtttcaaagttgataag |
198 |
Q |
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|||||||||| |||||| | |||| |||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||| |||||| | |
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| T |
20655387 |
tttgcgtagtgcttccaaatcttcaaaagttaagaatggtggtgaatcctcc-aacacccaatcttcatcatcctcttcaagtgtttcaaaattgatagg |
20655289 |
T |
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| Q |
199 |
gttataattttg |
210 |
Q |
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|| ||||||||| |
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| T |
20655288 |
gtcataattttg |
20655277 |
T |
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