View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536-Insertion-5 (Length: 360)
Name: NF4536-Insertion-5
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 36354013 - 36353655
Alignment:
| Q |
8 |
aatctttgcatagagctggtggatctccatggggagtggcactcttgcttgtgttcctcttgtctatgatttcttatcagtcttcttttcatgaacgttg |
107 |
Q |
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| T |
36354013 |
aatctttgcatagagctggtggatctccatggggagtggcactcttgcttgtgttcctcttgtttatgatttcttatcagtcttcttttcatgaacgttg |
36353914 |
T |
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| Q |
108 |
gtttcctttcgctacaagatgaagatctaattctcaactagttggcatctatatagaatcgacacttcagattggatgtctgataccgacatgatactga |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36353913 |
gtttcctttcgctacaagatgaagatctcattctcaactagttggtatctatatagaatcgacacttcagattggaggtctgataccgacatgatactga |
36353814 |
T |
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| Q |
208 |
catatatagttacgttcaaccactcgttttgttaaagaaatatta--gtgtaggagctagtgcagtattgtgtctaatatttatgcttgtgtcgttgctt |
305 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36353813 |
tatatatagttacgttcaaccacttgttttgttaaagaaatattattgtgtaggagctagtgcagtattgtgtctaatatttatgcttgtgtcgttgctt |
36353714 |
T |
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| Q |
306 |
c----atcggttcacgttggaggtcagtgtgtgtgaactctatgtaatatttttcatag |
360 |
Q |
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| T |
36353713 |
catcgatcggttgacgttggaggtcagtgtgtgtgaactctatgtaatatttttcatag |
36353655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 36355291 - 36355191
Alignment:
| Q |
16 |
catagagctggtggatctccatggggagtggcactcttgcttgtgttcctcttgtctatgatttcttatcagtcttcttttcatgaacgttggtttcctt |
115 |
Q |
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||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||| |
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| T |
36355291 |
catagagctggtggatcaccatggggagttgcactgttgcttgtgttccttttgttcatgatggctcatcagtcttcttttcatgaacgttggtttcctt |
36355192 |
T |
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| Q |
116 |
t |
116 |
Q |
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| T |
36355191 |
t |
36355191 |
T |
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