View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536-Insertion-7 (Length: 279)
Name: NF4536-Insertion-7
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536-Insertion-7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 41706442 - 41706171
Alignment:
| Q |
8 |
cttaggcgatattgaatcccttcaatacgactcaacatctttcgaaacaccactcacctacggtttagacgaatctatcatcaaaacaatcccattcttt |
107 |
Q |
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| T |
41706442 |
cttaggcgatattgaatcccttcaatacgactcaacatctttcgaaacaccactcacctacggtttagacgaatctatcatcaaaacaatcccattcttt |
41706343 |
T |
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| Q |
108 |
atctacacaactaaatacgaacaagaatctcgccgtgactgtgccgtttgtttactcgaatttgaagatcacgattacgttcgtactcttcctctctgtt |
207 |
Q |
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| T |
41706342 |
atctacacaactaaatacgaacaagaatctcgccgtgactgtgccgtttgtttactcgaatttgaagatcacgattacgttcgtactcttcctctctgtt |
41706243 |
T |
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| Q |
208 |
cccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctctc |
279 |
Q |
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| T |
41706242 |
cccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctctc |
41706171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 35356824 - 35356921
Alignment:
| Q |
180 |
gattacgttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctc |
277 |
Q |
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| T |
35356824 |
gattacattcgcactctccctctttgttcccacactttccatctcgcttgcattgatgcttggcttcataaacaacctaattgtcctctatgtcgctc |
35356921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 35351690 - 35351787
Alignment:
| Q |
180 |
gattacgttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctc |
277 |
Q |
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| T |
35351690 |
gattacattcgcaccctccctctttgttcccacattttccatctcgcttgcattgatgcttggcttcataaacaacctagctgtcctctttgtcgctc |
35351787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 47906078 - 47905987
Alignment:
| Q |
186 |
gttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctc |
277 |
Q |
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| T |
47906078 |
gttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc |
47905987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 47908850 - 47908759
Alignment:
| Q |
186 |
gttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttcacacgctaactgtcctctctgtcgctc |
277 |
Q |
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| T |
47908850 |
gttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtcctctatgtcgctc |
47908759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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