View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536_high_2 (Length: 471)
Name: NF4536_high_2
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 49656316 - 49655885
Alignment:
| Q |
13 |
atatcgtatgaaacacactttagcctgagggtgttcgcattcgcaagagagggtgagggagttaatatataatcagaaaccatgtagaatgtgtttggaa |
112 |
Q |
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| T |
49656316 |
atatcgtatgaaatacaccttagcctgagggtgttcacattcacaagggagggtgagggagttaatatataatcagaaaccatgtagaatgtgtttggaa |
49656217 |
T |
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| Q |
113 |
tacggtgtctgacgtgaaattctaacttctacacaacatatctattggaaaagtttgattagccacttacttgtctcaatatgatttcattaacaagaac |
212 |
Q |
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| T |
49656216 |
tacggtgtctgacgtgaaattctaatttctacaaaacatatctattggaaaagtttgattagccacttacttgtctcaatatgatttcattaac------ |
49656123 |
T |
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| Q |
213 |
ctataaagcacttgaataattggtaacgtcttgaatagttttagacttataattttttaatagacaaacgttagtgattaatttgttaatgttagagtca |
312 |
Q |
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| T |
49656122 |
-----aagcacttgaataattggtaacgttttgaatagttttagacttataattttttaatagacaaacgttagtgattaatttgttaatgt-------- |
49656036 |
T |
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| Q |
313 |
tatatggaccttttttgtaatactctttcaacatctcaacc------tatataaatgaactatgcgcttggggacggttttaaatttgtaattgaaatag |
406 |
Q |
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| T |
49656035 |
--tatggaccttttttgtaatactctttcaacatctcaacctatatatatataaatgaactatgcgctcggggacggttttaaatttgtaattgaaatag |
49655938 |
T |
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| Q |
407 |
ttaggag---tattattatgcaagtaaaagtaaagttgcacggggtactaaat |
456 |
Q |
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| T |
49655937 |
ttaggagtattattattatgcaagtaaaagtaatgttgcacggggtactaaat |
49655885 |
T |
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