View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536_high_9 (Length: 253)
Name: NF4536_high_9
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42662864 - 42662622
Alignment:
| Q |
1 |
ttcctctaagatgtgcagctgagtttctacaaatgagtgaggattatggagaaggaaacctaatgatacaaactgaaaatttccttaaccacatatttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662864 |
ttcctctaagatgtgcagctgagtttctacaaatgagtgaagattatggagaaggaaacctaatgatacaaactgaaaatttccttaaccacatatttgg |
42662765 |
T |
|
| Q |
101 |
tcaatggacagacacactcaaggcactcaaaacatgtgaagaggttttacctttagctgaagagcttcacataacttcaagatgtatacattctttagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662764 |
tcaatggacagacacactcaaggcactcaaaacatgtgaagatgttttacctttagctgaagagcttcacataacttcaagatgtatacattctttagtt |
42662665 |
T |
|
| Q |
201 |
ttgaaagctgcagatccaactttggctatattacctctctctg |
243 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42662664 |
ttgaaagctgcagatccaactttggctatcttacctctctctg |
42662622 |
T |
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