View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4536_low_1 (Length: 621)

Name: NF4536_low_1
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4536_low_1
NF4536_low_1
[»] chr1 (4 HSPs)
chr1 (1-281)||(8631769-8632048)
chr1 (319-400)||(17743699-17743780)
chr1 (319-402)||(5716254-5716337)
chr1 (146-219)||(37108463-37108536)
[»] chr5 (3 HSPs)
chr5 (1-218)||(37609070-37609285)
chr5 (134-224)||(22861313-22861403)
chr5 (269-316)||(37609284-37609331)
[»] chr8 (1 HSPs)
chr8 (316-477)||(31007631-31007792)
[»] scaffold0047 (1 HSPs)
scaffold0047 (122-316)||(72685-72877)
[»] chr3 (1 HSPs)
chr3 (205-279)||(46673457-46673531)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 8632048 - 8631769
Alignment:
Q  1 atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattaccccatcaagcaaaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  8632048 atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattaccccatccagcaaaaac 8631950  T
Q  101 ttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgc 200  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  8631949 ttataacttagactacttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttgattgtcttattgc 8631850  T
Q  201 aaatataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatat 281  Q
     |||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| | |||||||||||||    
T  8631849 gaatataatataaatatcatacatgttagtcgtaactagcaatttaaaaataatttgttcaaaaacagtcttcatctatat 8631769  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 17743780 - 17743699
Alignment:
Q  319 ttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggt 400  Q
    ||||||||||||||||||||||  || ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  17743780 ttttgaaagaatttttaaataatctactattacgtcgtggaccggtataataatattgggccagaggtacgtcatatgtggt 17743699  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 5716254 - 5716337
Alignment:
Q  319 ttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggtcc 402  Q
    |||| ||||||||||||||||| ||| ||||| || |||||||||||||||||| ||||| ||||| |||  ||||||||||||    
T  5716254 ttttaaaagaatttttaaataatttactattacgttgtggaccggtataataatattgggtcagaggtacatcatatgtggtcc 5716337  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 37108463 - 37108536
Alignment:
Q  146 aaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtca 219  Q
    |||||||||||||||||||| |||  |||  ||||||||| |||||  ||||| |||||| ||| |||||||||    
T  37108463 aaagttgtgataaatttattgtgtcccatatcattatatttgattgcgttattacaaataaaatttaaatgtca 37108536  T

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Target: chr5 (Bit Score: 174; Significance: 3e-93; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 37609070 - 37609285
Alignment:
Q  1 atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtagtgatcaagttcctattaccccatcaagcaaaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  37609070 atcaaacatgtggaggacaataatatgattaagttgtgatcaagttgtctaaaaaatatcaagtag-gatcaagttcctattaccccatccagcaaaaac 37609168  T
Q  101 ttataacttaaactacttttgtaagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgc 200  Q
    || ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  37609169 ttttaacttagacta-ttttgtaagataaaatcttatattagtgaaaagttgtgataaatttattttgtttcattccattatatttgattgtcttattgc 37609267  T
Q  201 aaatataatataaatgtc 218  Q
     |||||||||||||||||    
T  37609268 gaatataatataaatgtc 37609285  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 22861313 - 22861403
Alignment:
Q  134 ttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcatacat 224  Q
    ||||| ||||||||  |||||| ||||||||||| |||||   ||||||||| |||||||||||||||||| ||||||||||  |||||||    
T  22861313 ttataccagtgaaagtttgtgagaaatttattttatttcaaagcattatatttgattgtcttattgcaaatgtaatataaatagcatacat 22861403  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 37609284 - 37609331
Alignment:
Q  269 tcttcatctatatcagacccgtgcgatagtacaggtgaaaagtctagt 316  Q
    ||||| ||||||||| ||||||||||||| || |||||||||||||||    
T  37609284 tcttcttctatatcacacccgtgcgatagcacgggtgaaaagtctagt 37609331  T

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Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 316 - 477
Target Start/End: Original strand, 31007631 - 31007792
Alignment:
Q  316 ttcttttgaaagaatttttaaataaattattattaggtcgtggaccggtataataatcttgggccagagatacgccatatgtggtccagattgacccggt 415  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||| ||||    
T  31007631 ttcttttgaaggaatttttatataaattattattaggtcgtggaccggtataataatcttgggccaaagatatgccatatgtgatccaaattgactcggt 31007730  T
Q  416 aactaatttaacttgggccacatttacgttccaacttgtctgttatgctctgacttgccaaa 477  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31007731 aactaatttaacttgggccacctttacgttccaacttgtctgttatgctctgacttgccaaa 31007792  T

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Target: scaffold0047 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 122 - 316
Target Start/End: Original strand, 72685 - 72877
Alignment:
Q  122 taagataaaatcttatatcagtgaaaagttgtgataaatttattttgtttcatgccattatattcgattgtcttattgcaaatataatataaatgtcata 221  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||| ||||||||  |||||||  |||||||||||    
T  72685 taagataaaatcttatatcagtgaaa-gttgaaataaatttattttgtttcatgtcattatattcgatt-tcttattgtgaatataaggtaaatgtcata 72782  T
Q  222 catgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctatatcagacccgtgcgatagtacaggtgaaaagtctagt 316  Q
    ||||||||| ||||||||||||||||| || ||||||| |||| |||||||||||||||||| | ||||||||||| || |||||||||||||||    
T  72783 catgttagtagcaactaacaatttaaagatcatttgtttaaaactaatcttcatctatatcatatccgtgcgatagcacgggtgaaaagtctagt 72877  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 46673531 - 46673457
Alignment:
Q  205 ataatataaatgtcatacatgttagttgcaactaacaatttaaaaataatttgttcaaaaataatcttcatctat 279  Q
    |||||||||||||| |||||||||||  |||||| ||||||||||||||||||| |||||| |||||||||||||    
T  46673531 ataatataaatgtcttacatgttagtcacaactagcaatttaaaaataatttgtccaaaaacaatcttcatctat 46673457  T

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