View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536_low_15 (Length: 221)
Name: NF4536_low_15
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 36063398 - 36063581
Alignment:
| Q |
15 |
gtgagatgaatataaagatagagagaaaatgaagtgttgaattagtgtaggaaaaatgaaggtgtgcaaaaataattgcttgttaaaattacatattttc |
114 |
Q |
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| T |
36063398 |
gtgatatgaatattaagatagagagaaaatgaagtattgaattagtgtaggaaaaatgaaggtgtgcaaaaataattgcttgttaaaattacatattttc |
36063497 |
T |
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| Q |
115 |
attgcaaaaatatgatcaaaattcaatttaaaagagagtaagagactttaatttgtcacacaaatagcttcctcagttgtcagt |
198 |
Q |
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| T |
36063498 |
attgcaaaaatatgatcaaaatttaatttaaaagagagtaagagactttaatttgtcacacaaatagcttcctcagttgtcagt |
36063581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 30957667 - 30957628
Alignment:
| Q |
30 |
agatagagagaaaatgaagtgttgaattagtgtaggaaaa |
69 |
Q |
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| T |
30957667 |
agatagagagaaaataaagtgttgaatgagtgtaggaaaa |
30957628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 21549939 - 21549911
Alignment:
| Q |
28 |
aaagatagagagaaaatgaagtgttgaat |
56 |
Q |
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| T |
21549939 |
aaagatagagagaaaatgaagtgttgaat |
21549911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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