View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536_low_3 (Length: 541)
Name: NF4536_low_3
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 31828647 - 31829168
Alignment:
| Q |
1 |
gcgcaggagcgggtttgatataagctgtgaggttaagaagggtggtaaaggagccagttttgctgcttaatttagaaaagtatggagttcggttattctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828647 |
gcgcaggagcgggtttgatataagctgtgaggttaagaagggtggtaaaggagccagttttgctgcttaatttagaaaagtatggagttcggttattctc |
31828746 |
T |
|
| Q |
101 |
gcagatgtggctatgcttcttgcatggtctcgtgcatttcggaggtggcctgaaagtgacagaatgggaggtgtcagttggaggcgtattggactggtag |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828747 |
gcagatgtggctatgcttcttgcatggtctggtgcatttcggaggtggcctgaaagtgacagaatgggaggtgtcagttggaggcgtattggactggtag |
31828846 |
T |
|
| Q |
201 |
tcttggtttaaatagtatttttctgcatagtttacagttatgtggctatgagagtggcgggagtaggatatgaagaaagctttggaagttagcaaaattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31828847 |
tcttggtttaaatagtatttttctgcatagtttacagttatgtggctatgagagtggcgggattaggatatgaagaaagctttggaagttagcaaaattg |
31828946 |
T |
|
| Q |
301 |
caggttgtatgatgcatagcttaaggtttattgtggatt-gggagtaggtgagatagttccagcattcttttactccaactcaatctgaaatgtaggtgg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828947 |
caggttgtatgatgcatagcttaaggtttattgtggattggggagtaggtgagatagttccagcattcttttactccaactcaatctgaaatgtaggtgg |
31829046 |
T |
|
| Q |
400 |
aagtaattatagaagtggagaatggtattgcttgagagtctgattgacattatttgagcctggatattaatccaaaaaatcaattgtgagaatggtacac |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
31829047 |
aagtaattatagaagtggagaatggtattgcttgagagtctgattgacattatttgagcttggatat---tccaaaaaatcaattgtgagaatggtacac |
31829143 |
T |
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| Q |
500 |
cagtaggtgtcttataaggaatttg |
524 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
31829144 |
cagtaggtgtcttataaggaatttg |
31829168 |
T |
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