View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536_low_4 (Length: 491)
Name: NF4536_low_4
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 160 - 473
Target Start/End: Original strand, 30870197 - 30870517
Alignment:
| Q |
160 |
aaaaatatataaaaaagttaaatttaatgaatccacatta------gttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
253 |
Q |
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| T |
30870197 |
aaaaatatataaaaaagttaaatttaatgagtccacattactattagttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
30870296 |
T |
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| Q |
254 |
aaaagtatttataatacagaatat--atatattgacgtataattatactataatcaagtaatctgtgcacccgagcatgttgctgctgcacgcaaatgga |
351 |
Q |
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| T |
30870297 |
aaaagtatttataatacagaatatatatatattgacgtataattatactataatcaagtaatccgtgcacccgagcatgttgctgctgcacgcaaatgga |
30870396 |
T |
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| Q |
352 |
cagcaggtgcaagctgatacgcatctgcagctagccttgcaccagcaccattcgaatgcaggtactgtcacgcagcagtggctgccaccgagccttggga |
451 |
Q |
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| T |
30870397 |
cagcagttgcaagctgatacgcatctgcagctagccttgcacaagcaccattcgaattcaggtactgtcacgcagca-tggctgcgaccgagccttggga |
30870495 |
T |
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| Q |
452 |
gatacaaatgtaatgttgatgc |
473 |
Q |
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| T |
30870496 |
tatacaaatgtaatgttgatgc |
30870517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 30869930 - 30870015
Alignment:
| Q |
79 |
accttatatgaataatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
164 |
Q |
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| T |
30869930 |
accttatatgaatgatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
30870015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 30869861 - 30869896
Alignment:
| Q |
15 |
ttatactattatgcataaaaaatactgatattttgt |
50 |
Q |
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| T |
30869861 |
ttatactattatgcataaaaaatactgatattttgt |
30869896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 473
Target Start/End: Original strand, 9530143 - 9530239
Alignment:
| Q |
377 |
tgcagctagccttgcaccagcaccattcgaatgcaggtactgtcacgcagcagtggctgccaccgagccttgggagatacaaatgtaatgttgatgc |
473 |
Q |
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| T |
9530143 |
tgcagcaagccttgctccgacaccattcgcattcaggtactgtgacgcatgagttgctgccaccgagccttgggagatataaatgtaatgttgatgc |
9530239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 473
Target Start/End: Original strand, 5380444 - 5380531
Alignment:
| Q |
386 |
ccttgcaccagcaccattcgaatgcaggtactgtcacgcagcagtggctgccaccgagccttgggagatacaaatgtaatgttgatgc |
473 |
Q |
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||||||||||||||||| | | || || |||||||||| |||||| ||||||| || ||||||||||||||||| ||| ||||||| |
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| T |
5380444 |
ccttgcaccagcaccatcctcacacatgtgctgtcacgcatcagtggatgccaccaagtcttgggagatacaaatgcaatattgatgc |
5380531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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