View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4536_low_7 (Length: 322)
Name: NF4536_low_7
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536_low_7 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 8394465 - 8394788
Alignment:
| Q |
1 |
tatactaatcctaaacacacacatcataacaataaataccttcaaataatat--atatcatgtcttcgatacaaacttcagttctactttcttgttcttt |
98 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8394465 |
tatactaatcctaaacacacacatcataacaataaacaccttcaaataatatatatatcatgtcttcaatacaaacttcagttctactttcttgttcttt |
8394564 |
T |
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| Q |
99 |
atcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394565 |
atcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgat |
8394664 |
T |
|
| Q |
199 |
caagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattgtacaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8394665 |
caagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaa |
8394764 |
T |
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| Q |
299 |
tttctaatgctacagttcaactct |
322 |
Q |
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||||||||||||||||||||||| |
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| T |
8394765 |
attctaatgctacagttcaactct |
8394788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 49 - 322
Target Start/End: Complemental strand, 8412934 - 8412661
Alignment:
| Q |
49 |
atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac |
148 |
Q |
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| T |
8412934 |
atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac |
8412835 |
T |
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| Q |
149 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
248 |
Q |
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| T |
8412834 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
8412735 |
T |
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| Q |
249 |
caacaacatcacacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactct |
322 |
Q |
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| T |
8412734 |
caacaacatcacacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactct |
8412661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 49 - 322
Target Start/End: Complemental strand, 8435032 - 8434759
Alignment:
| Q |
49 |
atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac |
148 |
Q |
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|||||||||||| ||| ||||||||||||||| | |||||||||||||||| || |||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
8435032 |
atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac |
8434933 |
T |
|
| Q |
149 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
248 |
Q |
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| T |
8434932 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
8434833 |
T |
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| Q |
249 |
caacaacatcacacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactct |
322 |
Q |
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| T |
8434832 |
caacaacatcacacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactct |
8434759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 8431914 - 8431775
Alignment:
| Q |
68 |
tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtc |
167 |
Q |
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||||||||||||||||| ||||||||||||||| || |||||| |||||||| |||||| |||| |||| ||||||||| |||||||||||||| | |
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| T |
8431914 |
tacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaatgctgcaattaatcttccaaaactcccaaatatttcattgcc |
8431818 |
T |
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| Q |
168 |
aaagatacaaactagaaaacaagttgatgatcaagaactaaaa |
210 |
Q |
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| T |
8431817 |
aactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
8431775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 8406833 - 8406694
Alignment:
| Q |
68 |
tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtc |
167 |
Q |
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||||||||||||||||| ||||||||||||||| || |||||| |||||||| || ||| |||| |||| ||||||||| |||||||||||||| | |
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| T |
8406833 |
tacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaacgctgcaattaatcttccaaaactcccaaatatttcattgcc |
8406737 |
T |
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| Q |
168 |
aaagatacaaactagaaaacaagttgatgatcaagaactaaaa |
210 |
Q |
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|| || ||||| ||||||||||||| |||||||||| ||||| |
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| T |
8406736 |
aactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
8406694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 8431743 - 8431684
Alignment:
| Q |
263 |
aaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactct |
322 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||| || ||| ||||||||| |
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| T |
8431743 |
aaatattacaagatcaacaacaaaagcattctacaaattctaaagccacaattcaactct |
8431684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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