View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4536_low_9 (Length: 261)
Name: NF4536_low_9
Description: NF4536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4536_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 11522618 - 11522793
Alignment:
| Q |
1 |
caatatttgtgtttagtttatctaatatttaaaattaatgagatattaattgtannnnnnnnnn-atcatttctttaattaataaagcatacattcaccc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11522618 |
caatatttgtgtttagtttatctaatattttaaattaatgagatattaattgtattttttttattatcatttctttaattaataaagcatacattcaccc |
11522717 |
T |
|
| Q |
100 |
atgttcgattcgtttgtaattgcttctttttattaattgattcaaacaagttaattcgcaacaacattaaaagtta |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11522718 |
atgttcgattcgtttgtaattgcttctttttattaattgattcaaacaagttaattcgcaacaacattaaaagtta |
11522793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 11523558 - 11523653
Alignment:
| Q |
167 |
taaaagttataatgattactttcttagtagaatttaacttgtttaccgttagctca-ttcaataccaacaacaaaaattagttatttattgagaat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11523558 |
taaaagttataatgattactttcttagtagaatttaacttgtttactgttagctcatttcaataccaacaacaaaaattagttatttattgagaat |
11523653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University