View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537-Insertion-1 (Length: 696)
Name: NF4537-Insertion-1
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537-Insertion-1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 100 - 696
Target Start/End: Original strand, 1110723 - 1111319
Alignment:
| Q |
100 |
tatttgctagacaatatcacattctagccaaaaacatcttcaattgcagcagccaccttctatacttgtctttccatagtgtccacaagtccatacaaga |
199 |
Q |
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| T |
1110723 |
tatttgctagacaatatcacattctagccaaaaacatcttcaattgcagcagccaccttctatacttgtctttccatagtgtccacaagtccatacaaga |
1110822 |
T |
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| Q |
200 |
agtaatatctgcaaaagttcaatttatacttatcagatttaacaagcacataaccttacactttcaaaaattcattatgtgcataccaggtnnnnnnnnn |
299 |
Q |
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| T |
1110823 |
agtaatatctgcaaaagttcaatttatacttatcagatttaacaagcacataaccttacactttcaaaaattcattatgtgcataccaggtaaaaaaaaa |
1110922 |
T |
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| Q |
300 |
nnngcattgaaaaatacaagttggagtcttctaagggtaaaacaatgatctctctaagcaacagtcagtggaaagatcaagtgaaacaatcacatgttgc |
399 |
Q |
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| T |
1110923 |
aaagcattgaaaaatacaagttggagtctgttaagggtaaaacaatgatctctctaagcaacagtcagtggaaagatcaagtgaaacaatcacatgttgc |
1111022 |
T |
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| Q |
400 |
tcaacggtaactctattagaattccaagatagattatcctctaaacaaatgtaattatcccgcatgctgagaactttcaccatgcttcttgcaacacgac |
499 |
Q |
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| T |
1111023 |
tcaacggtaactctattagaattccaagatagattatcctctaaacaaatgtaattatcccgcatgctgagaactttcaccatgcttcttgcaacacgac |
1111122 |
T |
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| Q |
500 |
gctccttatcatacttactaccgaacgctaccaccttataagttccggtggaattatcataaccaaaagagtaacgaaaataaccattcaaatggggtgn |
599 |
Q |
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| T |
1111123 |
gctccttatcatacttactaccgaacgctaccaccttataagttccggtggaattatcataaccaaaagagtaacgaaaataaccattcaaatggggtga |
1111222 |
T |
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| Q |
600 |
nnnnnntacagatgattttgtcctagtggctggtttccagagaacccaatgctgaatatcataattagtcaaacatagtaaggatcatattgaatgg |
696 |
Q |
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| T |
1111223 |
aaaaaatacagatgattttgtcctagtggctgttttccagagaacccaatgctgaatatcataattagtcaaacatagtaaggatcatattgaatgg |
1111319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 1110631 - 1110669
Alignment:
| Q |
8 |
caatgtaactatcacagcaagtgacaaaacaaggaattc |
46 |
Q |
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| T |
1110631 |
caatgtaactatcacagcaagtgacaaaacaaggaattc |
1110669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 568
Target Start/End: Complemental strand, 10460244 - 10460202
Alignment:
| Q |
526 |
gctaccaccttataagttccggtggaattatcataaccaaaag |
568 |
Q |
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| T |
10460244 |
gctaccaccttataagtttcagtcgaattatcataaccaaaag |
10460202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 832944 - 832891
Alignment:
| Q |
229 |
ttatcagatttaacaagcacataaccttacactttcaaaaattcattatgtgca |
282 |
Q |
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| T |
832944 |
ttatctgatttaacaggcacataaccttactctatcaatagttcattatgtgca |
832891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 10571460 - 10571505
Alignment:
| Q |
364 |
tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa |
409 |
Q |
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| T |
10571460 |
tcagttgagagatcaagtgaaacaatcacatattgctcaacagtaa |
10571505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 25377615 - 25377507
Alignment:
| Q |
112 |
aatatcacattctagccaaaaacatcttcaattgcagcagccaccttctatacttgtctttccatagtgtccacaagtccatacaagaagtaatatctgc |
211 |
Q |
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| T |
25377615 |
aatatcacattctagtcaataccatcttcaattgtagcagccaccttctatacctgtctttccatattgtccacaagtccatacaagaagtaatatctgc |
25377516 |
T |
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| Q |
212 |
aaaagttca |
220 |
Q |
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| T |
25377515 |
aaaagttca |
25377507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 25376741 - 25376695
Alignment:
| Q |
526 |
gctaccaccttataagttccggtggaattatcataaccaaaagagta |
572 |
Q |
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| T |
25376741 |
gctaccaccttataagttccagtggaattatcatggccaaaagagta |
25376695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 25901463 - 25901508
Alignment:
| Q |
364 |
tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa |
409 |
Q |
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| T |
25901463 |
tcagtggacagatcaagcgaaacaatcacatattgctcaacagtaa |
25901508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 25915481 - 25915526
Alignment:
| Q |
364 |
tcagtggaaagatcaagtgaaacaatcacatgttgctcaacggtaa |
409 |
Q |
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| T |
25915481 |
tcagtggacagatcaagcgaaacaatcacatattgctcaacagtaa |
25915526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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