View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537-Insertion-2 (Length: 588)
Name: NF4537-Insertion-2
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 38005391 - 38005128
Alignment:
| Q |
8 |
ccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataacagggatacaatgttgtttgagaatgcaagtg |
107 |
Q |
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| T |
38005391 |
ccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataacagggatacaatgttgtttgagaatgcaagtg |
38005292 |
T |
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| Q |
108 |
aagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaaatgttaatgt |
207 |
Q |
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| T |
38005291 |
aagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaaatgttgatgt |
38005192 |
T |
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| Q |
208 |
tgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
271 |
Q |
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| T |
38005191 |
tgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
38005128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 347 - 588
Target Start/End: Complemental strand, 38005056 - 38004815
Alignment:
| Q |
347 |
gaggcatgatggattgagtatttgtggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
446 |
Q |
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| T |
38005056 |
gaggcatgatggattgagtatttttggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
38004957 |
T |
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| Q |
447 |
aaagtttcattgtggtgaaatttcacttttggttccaacnnnnnnnttcagcagatattgtaattgagaataattatggatgttaaatttacttttgttc |
546 |
Q |
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| T |
38004956 |
aaagtttcattgtggtgaaatttcacttttggttccaacaaaaaaattcagcagatattgtaattgagaatagttatggatgttaaatttacttttgttc |
38004857 |
T |
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| Q |
547 |
ttatcagacgttatcatcattccgtaagatttcatgtgttcc |
588 |
Q |
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| T |
38004856 |
ttatcagacgttatcatcattccgtaagatttcttgtgttcc |
38004815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 26462416 - 26462679
Alignment:
| Q |
8 |
ccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataacagggatacaatgttgtttgagaatgcaagtg |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |
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| T |
26462416 |
ccaatgccatgggaattgttacaaccagttttgagaatattgggacattgtttgttgggaccaaataacaaggatacaatgttgtttgagaaagcaagtg |
26462515 |
T |
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| Q |
108 |
aagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaaatgttaatgt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
26462516 |
aagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgagactttctaaaaatgttgttgt |
26462615 |
T |
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| Q |
208 |
tgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
271 |
Q |
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| T |
26462616 |
tgatgattttgatccaactgaaccacccaagactgatgttatcactctttagtactttatggtg |
26462679 |
T |
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