View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537-Insertion-4 (Length: 391)
Name: NF4537-Insertion-4
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 391
Target Start/End: Complemental strand, 31241344 - 31240960
Alignment:
| Q |
6 |
caaatgatacatgaacctcattactcacattaatgaatttaacctcatcactcattaatgcatttaacctctcgattttgtactactcggtactcacatt |
105 |
Q |
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| T |
31241344 |
caaatgatacatgaacctcattactcacattaatgaatttaacctcattactcattaatgcatttaacctctcgattttgtactactcggtactcacatt |
31241245 |
T |
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| Q |
106 |
aactttgctgtcttctcagaagcagcagagcaattgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagag |
205 |
Q |
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| T |
31241244 |
aactttgctgtcttctcagaagcagcagagcaattgtatgccacccaactttcacagcttcaagagatgggattctttgacacacaagaaaacataagag |
31241145 |
T |
|
| Q |
206 |
ctcttattgccacttcaggggatgttcatgccgccattcaacgtctttcgaggaactccaatcagtagcagataatgtggaaaattcccttcatgatgct |
305 |
Q |
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| T |
31241144 |
ctcttattgccacttcaggggatgttcatgccgccattcaacgtctttcgaggaactccaatcagtagcagataatgtggaaaattcccttcatgatgct |
31241045 |
T |
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| Q |
306 |
ttctccggtcaagtcacgcatgcatgttcctttctattttattagttgtaatgaatattttgcagtcaattttattttattgctta |
391 |
Q |
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| T |
31241044 |
ttctccggtcaagtcacacatgcatgttcc-ttctattttattagttgtaatgaatattttgcagtcaattttattttattgctta |
31240960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 109 - 253
Target Start/End: Complemental strand, 31255338 - 31255194
Alignment:
| Q |
109 |
tttgctgtcttctcagaagcagcagagcaattgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctc |
208 |
Q |
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|||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
31255338 |
tttgttgtcttctcagagccaccagagcaattgtatgccacccagcttacacagcttcaagagatgggattctttgacacacaagagaacataagggctc |
31255239 |
T |
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| Q |
209 |
ttattgccacttcaggggatgttcatgccgccattcaacgtcttt |
253 |
Q |
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| T |
31255238 |
ttattgccacttcagggaatgttcatgcggccgttgaacgtcttt |
31255194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 155 - 382
Target Start/End: Complemental strand, 7206158 - 7205930
Alignment:
| Q |
155 |
tttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgttcatgccgccattcaacgtctttc |
254 |
Q |
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| T |
7206158 |
tttcacagcttcaagagatgggattctttgacacacaagaaaacgtaaaagctcttatttccacttcaggggatgttcatgccgcaattcaacgtctttt |
7206059 |
T |
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| Q |
255 |
gaggaactccaatcagtagcagataatgtggaaaattcccttcatgatgctttctccggtcaagtcacgcatgcatg-ttcctttctattttattagttg |
353 |
Q |
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| T |
7206058 |
tcggaactctaatcagtagcagataatgtgcaaaattcatttcatgatgctctctccggtcaagttacacatgcttgtttcccttctattttattagttg |
7205959 |
T |
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| Q |
354 |
taatgaatattttgcagtcaattttattt |
382 |
Q |
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| T |
7205958 |
taatgaatattttgttatcaattttattt |
7205930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 9494706 - 9494804
Alignment:
| Q |
138 |
attgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgttcatgc |
236 |
Q |
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| T |
9494706 |
attgtatgctacccagcttacccagcttcaagagatgggattctttgacacacaagagaacttaagggctcttattgctacatcagggaatgttcatgc |
9494804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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