View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537-Insertion-5 (Length: 121)
Name: NF4537-Insertion-5
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 32191526 - 32191401
Alignment:
| Q |
8 |
atttattctcaaatttttccnnnnnnngtcttgagccatcatatggtcaagacatcatt------------ttattccattgcattcttaaaaataagtc |
95 |
Q |
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| T |
32191526 |
atttattctcaaatttttccaaaaaaagtcttgagccatcatatggtcaagacatcattcttttcatcattttattccattgcattcttaaaaataagtc |
32191427 |
T |
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| Q |
96 |
tcacatcagcatatatctcctgcaca |
121 |
Q |
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| T |
32191426 |
tcacatcagcatatatctcctgcaca |
32191401 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 29466933 - 29466878
Alignment:
| Q |
60 |
catcattttattccattgcattcttaaaaataagtctcacatcagcatatatctcc |
115 |
Q |
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| T |
29466933 |
catcattgtacttcattgcattcttaaaaatcagccttacatcagcatatatctcc |
29466878 |
T |
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