View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537_high_6 (Length: 293)
Name: NF4537_high_6
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 7724155 - 7723888
Alignment:
| Q |
9 |
gagaagaacatatgagtttataaaaggaacaagcgaaaaatgataagagagtaaaataatagagagcaattaaacaatggtcaaacaagggaaaggggca |
108 |
Q |
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| T |
7724155 |
gagaagaacatatgggtttataaaaggaacaagtaaaaaatgataagagagtaaaataacagagagcaattaaacaatgctcaaacaagggaaagggaca |
7724056 |
T |
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| Q |
109 |
agccatcggctatgatatccaaaaacaatattagcataatttgccaccaataagagagtaacttaattttgtccaagagctgctgaattgaaaatattgt |
208 |
Q |
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| T |
7724055 |
agccatcggctatgatatccaagaacaatattagcataatttgccaccaataagagagtaatttaatgttgtccaagagctgctgaattgaaaatattgt |
7723956 |
T |
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| Q |
209 |
tattcctctctttctaaattacacaaacataaaagaaccaaatgacgtgcaagatagatggctgaact |
276 |
Q |
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| T |
7723955 |
tgttcctctctttctaaattacacaagcataaaagaaccaaatgacgtgcgagatagatcgctgaact |
7723888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 7730290 - 7730038
Alignment:
| Q |
22 |
gagtttataaaaggaacaagcgaaaaatgataagagagtaaaataatagagagcaattaaacaatggtcaaacaagggaaaggggcaagccatcggctat |
121 |
Q |
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| T |
7730290 |
gagtttattaaaggaacaaataaaaaatgataagaga--agaataaaagagagcaattaaacaatgctcaaacaagggaaagggacaagccatcggctat |
7730193 |
T |
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| Q |
122 |
gatatccaaaaacaatattagcataatttgccaccaataagagagtaacttaattttgtccaagagctgctgaattgaaaatattgttattcctctcttt |
221 |
Q |
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| T |
7730192 |
gatatccaaaaacaatattaacatattttgccaccaataagagtgtaacttaattttgtccaacagctgttgaattgaaaatattgttgttcctctcttt |
7730093 |
T |
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| Q |
222 |
ctaaattacacaaacataaaagaaccaaatgacgtgcaagatagatggctgaact |
276 |
Q |
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| T |
7730092 |
ctaaattacacaaaaacaaaagaaccaaatgacgtgcgagatagatcgcggaact |
7730038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 7716385 - 7716142
Alignment:
| Q |
10 |
agaagaacatatgagtttataaaaggaacaagcgaaaaatgataagagagtaaaataatagagagcaattaaacaatggtcaaacaagggaaaggggcaa |
109 |
Q |
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| T |
7716385 |
agaagaacatcagagattataaaagaaacaagtaaatattgatatgagagaaaaataatagagagcaattaaacaatgtcgaaacaagagaaaggggcaa |
7716286 |
T |
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| Q |
110 |
gccatcggctatgatatccaaaaacaatattagcataatttgccaccaataagagagtaacttaattttgtccaagagctgctgaattgaaaatattgtt |
209 |
Q |
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|||| ||||||||| |||||||||||||||||||| ||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
7716285 |
gccactagctatgatacccaaaaacaatattagcatattttgctactaataagaaagtaacttaattttgcccaagagctgctgaattgaaaattttgtt |
7716186 |
T |
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| Q |
210 |
attcctctctttctaaattacacaaacataaaagaaccaaatga |
253 |
Q |
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| T |
7716185 |
gttcctctctttccaaattacacgaacacaaaagaaccaaatga |
7716142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 41064049 - 41064016
Alignment:
| Q |
151 |
gccaccaataagagagtaacttaattttgtccaa |
184 |
Q |
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| T |
41064049 |
gccactaataagagagtaacttaattttgtccaa |
41064016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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