View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537_high_7 (Length: 256)
Name: NF4537_high_7
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 26986609 - 26986439
Alignment:
| Q |
67 |
gaaacaaatgttcaatcataaaatctaacgatctaacattgtataattacttatatattgtattataaaattaacttttcttcatacggttacatgttgc |
166 |
Q |
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| T |
26986609 |
gaaacaaatgttcaaacataaaatctaacgatctaacattgtataattaattatatattgtattataaaattaacttttcttcatacggttacatgttgc |
26986510 |
T |
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| Q |
167 |
ttcctcccaccactccaatcacaaactaaaatattcatcattaaaattcaagattattataatatcaggag |
237 |
Q |
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| T |
26986509 |
ttcctcccaccactccaatcacaaactaaaatattcatcattaaaattcaaggttattattatatcaggag |
26986439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 26986706 - 26986629
Alignment:
| Q |
4 |
atttactgattcaaccgtaaaaaatacttttatacatgattaagatattttacttgtgcacatgaaacaaatgttcaa |
81 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||| |
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| T |
26986706 |
atttactgattcaattgtaaaaaatacttttatgcatgactaaaatattttacttatgcacatgaaacaaatgttcaa |
26986629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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