View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537_low_1 (Length: 391)
Name: NF4537_low_1
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 2116949 - 2116595
Alignment:
| Q |
18 |
acacatttataaagttaatacatcagtggccgttgcatcgagatcaaatggtttagattttaaacttatattttatagtttaaaagaaaattaaaattgc |
117 |
Q |
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| T |
2116949 |
acacatttataaagttaatacatcagtggccgttgcatcgagatcaaatggtttagattttaaacttatattttagagtttaaaagaaaattaaaattgc |
2116850 |
T |
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| Q |
118 |
ttgttttataaactattcaatcttgattcaatgactatcgatgttctgactgcatgaataagggagattgttactatagggtatccatatcttggaaatg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2116849 |
ttgttttataaactgttcaatcttgattcaatgaccatcgatgttctgagtgcatgaataagcgagattgttactatagggtatccatatcttggaaatg |
2116750 |
T |
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| Q |
218 |
tacagagaagagtcatgtgnnnnnnnctcctctcaggctcttcctttcaagagtacagtacattggagttgaagtacttcacttccaactctcagccaaa |
317 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2116749 |
tacacagaagagtcatgtgtttttttctcctctcaggctcttcctttcaagagtacagtacattggagttgaagtacttcacttccaactctcagccaaa |
2116650 |
T |
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| Q |
318 |
aatagtagaaagctgaggaaaaacatttcaatggttcagagcagaagtacatatt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2116649 |
aatagtagaaagctgaggaaaaacatttcaatggttcagagcagaagtacatatt |
2116595 |
T |
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