View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537_low_10 (Length: 235)
Name: NF4537_low_10
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7368549 - 7368312
Alignment:
| Q |
1 |
acaacaataaagtcttatctcattaagtgggatca----tgtggatcaaactacgccataatatttatggtaaataatatttcaaatcagttcattaatc |
96 |
Q |
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||||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7368549 |
acaacaataaagtcttatctcattaggtgggatcaactatgtgaatcaaactacgtcataatatttatggtaaataatatttcgaatcagttcattaatc |
7368450 |
T |
|
| Q |
97 |
tctagatgataagactaccaagtctattgtgccaattttgaattggtaaaagaaggaacacagcnnnnnnnnnnnnnnnnntttactaatggaagtaacc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7368449 |
tctagatgataagactaccaagtctattgtgccaattttgaattggtaaaagaaggaacacag-aaaaaataaacaaaaaatttactaatggaagtaacc |
7368351 |
T |
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| Q |
197 |
tggaataagagaaacgaaatgtacattttggtatgaaac |
235 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
7368350 |
tggaataagagaaacgaaatgtgcattttggtatgaaac |
7368312 |
T |
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