View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4537_low_6 (Length: 318)
Name: NF4537_low_6
Description: NF4537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4537_low_6 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 24364934 - 24364633
Alignment:
| Q |
18 |
aaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatactt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24364934 |
aaagggttggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatactt |
24364835 |
T |
|
| Q |
118 |
ggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgataatgttgatcatagtgatgatgataaatcagttgagattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
24364834 |
ggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattt |
24364735 |
T |
|
| Q |
218 |
tggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattt |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24364734 |
tggatgaatggcttaatcggaagaaggctagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattt |
24364635 |
T |
|
| Q |
317 |
tc |
318 |
Q |
| |
|
|| |
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| T |
24364634 |
tc |
24364633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 24369713 - 24370014
Alignment:
| Q |
18 |
aaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatactt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24369713 |
aaagggttggaaaacttttactgaaaattactctcttggacatggttgcttggtggtgtttgaatataaaggaactttcaagtttgatgtagtaatactt |
24369812 |
T |
|
| Q |
118 |
ggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgataatgttgatcatagtgatgatgataaatcagttgagattt |
217 |
Q |
| |
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||| |||||||| |||||||||| |||||| ||||| |||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
24369813 |
ggcaagaatgcattagaaatagactatgatacttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattt |
24369912 |
T |
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| Q |
218 |
tggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattt |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
24369913 |
tggatgaatggcttaatcggaagaaggctagacaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattt |
24370012 |
T |
|
| Q |
317 |
tc |
318 |
Q |
| |
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|| |
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| T |
24370013 |
tc |
24370014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 24358360 - 24358658
Alignment:
| Q |
18 |
aaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatactt |
117 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||||| || || |
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| T |
24358360 |
aaagggttggaaatattttactgaaaattactctcttggacatggctctttggttgtgtttgaatataaaagaacttccaagtttgatgtacacattttt |
24358459 |
T |
|
| Q |
118 |
ggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgataatgttgatcatagtgatgatgataaatcagttgagattt |
217 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| |||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
24358460 |
ggccggaatgcagtagaaatagattat---tcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattt |
24358556 |
T |
|
| Q |
218 |
tggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattt |
316 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
24358557 |
tggacgaatggcttaattggaagaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattt |
24358656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 24344426 - 24344634
Alignment:
| Q |
18 |
aaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatactt |
117 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
24344426 |
aaagggttggaaatattttactgaaaattactctcttggacatggctctttggtggtgtttgaatataaaggaacttcgaaatttgatgtagtaatactt |
24344525 |
T |
|
| Q |
118 |
ggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgataatgttgatcatagtgatgatgataaatcagttgagattt |
217 |
Q |
| |
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|| | |||||||||||||||||| |||||| ||||| |||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
24344526 |
ggtcggaatgcagtagaaatagactatgatacttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattt |
24344622 |
T |
|
| Q |
218 |
tggatgaatggc |
229 |
Q |
| |
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| |||||||||| |
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| T |
24344623 |
tagatgaatggc |
24344634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 24354698 - 24354974
Alignment:
| Q |
18 |
aaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatactt |
117 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||| |||||| ||||||||| |||| ||||||||||| ||| |||||||||||| |||||| |
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| T |
24354698 |
aaagggttggaaatattttattgaaaattactctcttggacatggttgtttggtggtgttcaaatataaaggagattcaaagtttgatgtacacatactt |
24354797 |
T |
|
| Q |
118 |
ggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgataatgttgatcatagtgatgatgataaatcagttgagattt |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||| | ||||||| || || || |||||||||||||||||| | || |||||||||| |
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| T |
24354798 |
ggccagaatgcagtagaaatagactatgatccttcatgtgatggttatgatgagaaaaatgatattgatcatagtgatgatg---agtctgttgagattt |
24354894 |
T |
|
| Q |
218 |
tggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgaggt |
297 |
Q |
| |
|
|||| ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||| |||||||||||| ||||| |
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|
| T |
24354895 |
tggaagaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctcataagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 24351613 - 24351880
Alignment:
| Q |
18 |
aaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatactt |
117 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
24351613 |
aaagggttggaaacattttactgaaaattactctctacaacatggatgtttggtggtgtttaaatataaaggaacttccaagtttgatgtactaatactt |
24351712 |
T |
|
| Q |
118 |
ggccagaatgcagtagaaatagattatgattcttcaagtgacactaatgatgaaaatgataatgttgatcatagtgatgatgataaatcagttgagattt |
217 |
Q |
| |
|
|| | ||||| || |||||||| |||||||||||| |||||||| |||||||||||| ||||||| ||| | |||| ||| ||||| ||||||||| |
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|
| T |
24351713 |
ggtaataatgcggttgaaatagactatgattcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagattt |
24351809 |
T |
|
| Q |
218 |
tggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaa |
288 |
Q |
| |
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|||||||||| |||| ||||| |||| | |||| |||| || ||| ||||||||||||||||||| |
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|
| T |
24351810 |
cagatgaatggcgaaatcagaagattgctagaaaaaggccaccattattttatcctcgaccacataagaaa |
24351880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 24313878 - 24313989
Alignment:
| Q |
33 |
ttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatataaaggaacttccaagtttgatgtagtaatacttggccagaatgcagta |
132 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||||||| |||||||||||| | ||||||| |||||||||| || |
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| T |
24313878 |
ttttactgaaaattactctcttggacatgggtgtttggtaatgttcaaatataaaggaacttcaaagtttgatgtactcatacttgaccagaatgcacta |
24313977 |
T |
|
| Q |
133 |
gaaatagattat |
144 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24313978 |
gaaatagattat |
24313989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 24362051 - 24362183
Alignment:
| Q |
18 |
aaagggatggaaaacttttactgaaaattactctcttgaacatggctgtttggtgatgtttgaatat---aaaggaacttccaagtttgatgtagtaata |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||| | ||||||| ||||| | ||| |||||||||| ||||| |||| ||| |
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| T |
24362051 |
aaagggttggaaaacttttactgaaaattactctcttggacatgggtttttggtgttgtttaattatgaagaaggaacttctaagttccttgtacacata |
24362150 |
T |
|
| Q |
115 |
cttggccagaatgcagtagaaatagattatgat |
147 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| |
|
|
| T |
24362151 |
cttggcaagaatgcagtagaaatagactatgat |
24362183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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