View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538-Insertion-1 (Length: 940)
Name: NF4538-Insertion-1
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 349 - 940
Target Start/End: Original strand, 35029251 - 35029837
Alignment:
| Q |
349 |
ctgatccaaaataaccaatgcaatcaagaattttcaatttcattgatttagactatggaattcctcgtcccctacaatttcaaggactaaaacgatgaat |
448 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029251 |
ctgatccaaaataactaatacaatcaagaattttcaatttcattgatttagacgatggaattcctcgtcccctacaatttcaaggactaaaacgatgaat |
35029350 |
T |
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| Q |
449 |
cgttaatgagcagattctaccatataggtgataataattgttgatcataccagaaccagctgagagactccttgtagaatacatatgcttatggccatat |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35029351 |
cgttaatgagcagattctaccatataggtgataataattgttgatcataccagaaccagctgagagactccttgtagaatacatatgctcatggccatat |
35029450 |
T |
|
| Q |
549 |
gcagacataataacactccaagattaatctatctttaggatccaattcaaataacaccaaaaacttgcttcaagaaatccaaggtgtgtcctgaaatttt |
648 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35029451 |
gcagacataataacactccaagattaatctatctttaagatccaattcaaataacaccaaaaacttgcttcaagaaatccaaagtgtgtcctgaaatttt |
35029550 |
T |
|
| Q |
649 |
agagaaacttggtcattgttcataacaaaactcataaaagcttctagtcctaaacacatggcttcacatcacaatcaccaggcacagttgcaaacaacat |
748 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029551 |
agagaaacttggtcattgttcataacaaaactcataaaagcttctagtcctaaacacatggcttcacatcacaatcaccaggcacagttgcaaacaacat |
35029650 |
T |
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| Q |
749 |
taatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaacacaacatga |
848 |
Q |
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| T |
35029651 |
taatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaacacaacatg- |
35029749 |
T |
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| Q |
849 |
tcaaatcaaaacagccatgttgtgaacatgtgtgcagttaagccggtgatttgggaaggtagggaaagaaaagaacctatgacagacattat |
940 |
Q |
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| T |
35029750 |
----atcaaaacagccatgttgtgaacatgtgtgcagttaagccggtgatttgggaaggtagggaaagaaaagaacctatgacagacattat |
35029837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 35028936 - 35029252
Alignment:
| Q |
8 |
attgaaactagcagagtgactaataaaagtccaagagcggcaaatccagcaatgaagattgttgctgaaaatgatgtgatgtagaaacctgattctagca |
107 |
Q |
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| T |
35028936 |
attgaaactagcagagtgactaataaaagtccaagagcggcaaatccagcaatgaagattgttgcagaaaatgatgtgatgtagaaacctgattctagca |
35029035 |
T |
|
| Q |
108 |
caaaactactccccatctctgtgaacaagnnnnnnncaggaccaagcatactaatcaaaattagactttaataacaattagttgaatataatttctgttt |
207 |
Q |
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| T |
35029036 |
caaaactactccccatctctgtgaacaagaaaaaaacaggaccaagaatactaatcaaaattagactttaataacaattagttgaatataatatctgttt |
35029135 |
T |
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| Q |
208 |
gctcgaatagtgtgattaagaacgagtgcatcattaatttagtccttaaaacaatagggcaggtctccaaaatgacttttgaatatgaaaattctcgatc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029136 |
gctcgaatagtgtgattaagaacgagtgcatcattaatttattccttaaaacaatagggcaggtctccaaaatgacttttgaatatgaaaattctcgatc |
35029235 |
T |
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| Q |
308 |
acactagtcttttttct |
324 |
Q |
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||||||||||||||||| |
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| T |
35029236 |
acactagtcttttttct |
35029252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 197 - 641
Target Start/End: Complemental strand, 36860700 - 36860251
Alignment:
| Q |
197 |
aatttctgtttgctcgaatagtgtgattaagaacgagtgcatcattaatttagtccttaaaacaatagggcaggtctccaaaatgacttttgaatatgaa |
296 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36860700 |
aatttctgtttgctcgaatcgtgtgattaagaacgagtaaatcattaatttagtccttaaaactatagggcaggtctccaaaatgacttttgaatatgaa |
36860601 |
T |
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| Q |
297 |
aattctcgatcacactagtcttttttctagatcagttagtcggctatattgactgatccaaaataaccaatgcaatcaagaattttcaatttcattgatt |
396 |
Q |
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| T |
36860600 |
aattctcgaccacgctagtcttttttctagatcagttagtcggctatattgactgatccaaaatgactagtatgattgaaaattttcaatttcattgata |
36860501 |
T |
|
| Q |
397 |
tagactatggaattcctcgtcccctacaatttcaaggactaaaacgatgaatcgttaatgagcagattctaccatataggtgataataattgttga---- |
492 |
Q |
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||| | | || |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36860500 |
taggcgacagagttcctcgtcccctacaatttcaagaactaaaacgatgaaccgttaatgagcagaatctaccatataggtgataataattgttgatcat |
36860401 |
T |
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| Q |
493 |
--tcataccagaaccagctgagagactccttgtagaatacatatgcttatggccatatgcagacataataacactccaagattaatctatctttaggatc |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| || |||||||| |
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| T |
36860400 |
attcataccagaaccagctgagagactccttgtagaatacatatgctcatggccataagcagacataataacactccaagcttaattta---ttaggatc |
36860304 |
T |
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| Q |
591 |
caattcaaataaca--ccaaaaacttgcttcaagaaatccaaggtgtgtcctg |
641 |
Q |
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|||||||||||||| | ||||||| ||||||| |||||||||||||||||| |
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| T |
36860303 |
caattcaaataacaagcttaaaacttacttcaagtaatccaaggtgtgtcctg |
36860251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 740 - 940
Target Start/End: Complemental strand, 36860186 - 36859988
Alignment:
| Q |
740 |
aaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaac |
839 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36860186 |
aaacaacattaattgctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccgataagattctaac |
36860087 |
T |
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| Q |
840 |
acaacatgatcaaatcaaaacagccatgttgtgaacatgtgtgc-agttaagccggtgatttgggaaggtagggaaagaaaaga--acctatgacagaca |
936 |
Q |
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| T |
36860086 |
acaacatg-----agcaaaacaaccatgttgtgagcatgtgtgcaagttaagcctgtgatttgggaaggtagggaaagaaaagagcacctaggacagaaa |
36859992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 36860868 - 36860748
Alignment:
| Q |
8 |
attgaaactagcagagtgactaataaaagtccaagagcggcaaatccagcaatgaagattgttgctgaaaatgatgtgatgtagaaacctgattctagca |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
36860868 |
attgaaactagcagagtgactaataaaagtccaagtgtagcaaatccagcaatgaagattgtggcagaaaatgatgtgatgtagaaacctgattcaagca |
36860769 |
T |
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| Q |
108 |
caaaactactccccatctctg |
128 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
36860768 |
caaaactgctccccatctctg |
36860748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 1179226 - 1179180
Alignment:
| Q |
273 |
tccaaaatgacttttgaatatgaaaattctcgatcacactagtcttt |
319 |
Q |
| |
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|||||||||| || |||||| ||||||||| |||||||||||||||| |
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| T |
1179226 |
tccaaaatgatttctgaataagaaaattcttgatcacactagtcttt |
1179180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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