View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538-Insertion-11 (Length: 373)
Name: NF4538-Insertion-11
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538-Insertion-11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 85 - 373
Target Start/End: Complemental strand, 12455499 - 12455211
Alignment:
| Q |
85 |
acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcgatgaaggtta |
184 |
Q |
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| T |
12455499 |
acatctataaattgtaccattcacatattagtttactgtatatgagagactttacatatcacaataaaattgcagactccactatgatcaatgaaggtta |
12455400 |
T |
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| Q |
185 |
tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat |
284 |
Q |
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| T |
12455399 |
tcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatgaagcacaaat |
12455300 |
T |
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| Q |
285 |
actcctcggattaggagttttccgatgtcgaatatgtatccgtgtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttg |
373 |
Q |
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| T |
12455299 |
actcctcggattaggagttttccgatgtcgaatatgtatccgggtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttg |
12455211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 12455843 - 12455764
Alignment:
| Q |
8 |
caaggtgcccactattcatcatatctctcactcacctcaaattctagttgactcagagtgttggagtgtgtacgaataca |
87 |
Q |
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| T |
12455843 |
caaggtgcccactattcatcatatctctcactcacctcaaattcttgttgactcagagtgttggagtgtgtacgaataca |
12455764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 5654501 - 5654557
Alignment:
| Q |
268 |
gactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatc |
324 |
Q |
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| T |
5654501 |
gactatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatc |
5654557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Original strand, 30621753 - 30621782
Alignment:
| Q |
270 |
ctatgaagcacaaatactcctcggattagg |
299 |
Q |
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| T |
30621753 |
ctatgaagcacaaatactcctcggattagg |
30621782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 21211415 - 21211381
Alignment:
| Q |
268 |
gactatgaagcacaaatactcctcggattaggagt |
302 |
Q |
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| T |
21211415 |
gactatgaagcacaaacactcctcggattaggagt |
21211381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 299
Target Start/End: Complemental strand, 47132212 - 47132184
Alignment:
| Q |
271 |
tatgaagcacaaatactcctcggattagg |
299 |
Q |
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| T |
47132212 |
tatgaagcacaaatactcctcggattagg |
47132184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Original strand, 11596398 - 11596427
Alignment:
| Q |
270 |
ctatgaagcacaaatactcctcggattagg |
299 |
Q |
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| T |
11596398 |
ctatgaagcacaaatactcctcggattagg |
11596427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 38134335 - 38134383
Alignment:
| Q |
270 |
ctatgaagcacaaatactcctcggattaggagttttccgatgtcgaata |
318 |
Q |
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| T |
38134335 |
ctatgaagcacatacactcctcggattaggcgtgtcccgatgtcgaata |
38134383 |
T |
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