View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4538-Insertion-2 (Length: 875)
Name: NF4538-Insertion-2
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538-Insertion-2 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 738; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 8 - 875
Target Start/End: Original strand, 10838280 - 10839152
Alignment:
| Q |
8 |
caacgtgttacacattccagatattatcatcattccttcaaaaacaaaagatataat-atcatcatcaatcaataagtaaagcaatgtagataagattat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10838280 |
caacgtgttacacattccagatattatcatcattccttcaaaaacaaaagatatcatcatcatcatcaatcaataagtaaagcaatgtagataagattat |
10838379 |
T |
|
| Q |
107 |
atgattgagaagagatgaaggaatctgaattatttatttaaagtttaaagtgacaagtgaaaagaccacttttgtttcccactctatcactacactttcc |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10838380 |
atgattgagaagagatgaatgaatctgaattatttatttaaagtttaaagtgacaagtgaaaagaccacttttgtttcccactctatcactacactttcc |
10838479 |
T |
|
| Q |
207 |
tatttatttcatcctcatgcatgcttctcttattatttatggcttttctatttaaagcttcgtttataaacatatatatctcacctttcttcatttaatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10838480 |
tatttatttcatcctcatgcatgcttctcttattatttatggcttttctatttaaagcttcgtttataaacatatatatctcacatttcttcatttaatt |
10838579 |
T |
|
| Q |
307 |
tgcaatattcatttgatctcattcattatacttctcatcctctcttcagtaaatatgatcaataagttatgtagatcaaaacttatggacatccatttcg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10838580 |
tgcaatattcatttgatctcattcattatacttctcatcctctcttcagtaaatatgatcaataagttatgtagatcaaaacttatggccatccatttcg |
10838679 |
T |
|
| Q |
407 |
aaatagtgaggtttgttctttcaaaacttatatatctatttatttaatttgattacgaaaatatttgaaaacaaagagagcaaacataatataacttgcc |
506 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10838680 |
aaatagtgaggttggttctttcaaaacttatatatctatttatttaatttgattacgaaaatatttgaaaacaaagagagcaaacataatataacttgcc |
10838779 |
T |
|
| Q |
507 |
cttcaacttgtagcattttaaatattaacaaattaaatactgtaaaaaagaataacaaattaa-----ttgttattggtttgtctctctgtctgaactct |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10838780 |
cttcaacttgtagcattttaaatattaacaaattaaatactgtaaaaaagaataacaaattaaagtccttgttattggtttgtctctctgtctgaactct |
10838879 |
T |
|
| Q |
602 |
gaaggtaataagatactaagatcgtttacccttaccagttacttacaatgtttaagcatgact-aaaatcaagattttaatttacaatacgagcacttac |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
10838880 |
gaaggtaataagatactaagatcgtttacccttaccagttacttacaatgtttaagcatgactaaaaatcaagattttaatttacaatacaagcacttag |
10838979 |
T |
|
| Q |
701 |
ttttagctcgtagccatattgagcaaataaatattaatgaatgatgcacacttcatcatattgctaatttaattttatttcagtaacatggacaacttga |
800 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10838980 |
ttttagctcgtagccatattgaacaaataaatattaatgaatgatgcacacttcatcatattgctaa-ttagttttatttcagtaacatggacaacttga |
10839078 |
T |
|
| Q |
801 |
tnnnnnnnngaaagtaaaagtaacatgcacaataatcannnnnnnnagaggatgcacaaaaaatgcacattaata |
875 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10839079 |
taaaaaaaagaaagtaaaagtagcatgcacaataatca-tttttttagaggatgcacaaaaaatgcacattaata |
10839152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 10870313 - 10870356
Alignment:
| Q |
411 |
agtgaggtttgttctttcaaaacttatatatctatttatttaat |
454 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10870313 |
agtgaggtttgttccttcaaaacttatatatctatttatttaat |
10870356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 10870219 - 10870256
Alignment:
| Q |
287 |
tcacctttcttcatttaatttgcaatattcatttgatc |
324 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
10870219 |
tcacctttcttcatttaatttgaaatattaatttgatc |
10870256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University