View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538-Insertion-3 (Length: 845)

Name: NF4538-Insertion-3
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538-Insertion-3
NF4538-Insertion-3
[»] chr1 (2 HSPs)
chr1 (153-807)||(30977245-30977901)
chr1 (10-113)||(30977102-30977205)


Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 153 - 807
Target Start/End: Original strand, 30977245 - 30977901
Alignment:
Q  153 ttcagagaagaggtgcaaatgtgaatagtttgagaaaaacttgttgattgtataaacatatgaaagtctaagcatgcatgttcttcattggatttatagt 252  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30977245 ttcagagaagaggtgcaaatgtgaatactttgaggaaaacttgttgattgtataaacatatgaaagtctaagcatgcatgttcttcattggatttatagt 30977344  T
Q  253 tttttgaaagaaaattatgttgatctattacatatatttgatgnnnnnnnatatgcaatatacagttaattaataaatctaattgaggattttgtgatga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30977345 tttttgaaagaaaattatgttgatctattacatatatttgatgtttttttatatgcaatatacagttaattaataaatctaattgaggattttgtgatga 30977444  T
Q  353 tgaaatgttttgctatcactgaaatctggttcaacttggtatactgtttccaagaaagaacatatgacagaaaatttcatcaagataaagagtattatta 452  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30977445 tgaaatgttttgctctcactgaaatctggttcaacttggtatactgtttccaagaaagaacatatgacagaaaatttcatcaagataaagagtattatta 30977544  T
Q  453 tgaggaatattttatgcaagtcacatgctcatc---tatataaatctaaaagatcaagactggtccaagaaaattgagtttaattataaaatcagtcaaa 549  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30977545 tgaggaatattttatgcaagtcacatgctcatcatctatataaatctaaaagatcaagactggtccaagaaa-ttgagtttaattataaaatcagtcaaa 30977643  T
Q  550 tcacacaaattcaatatttacatcagtcagactaaacaagaatcattgaaatttgactgtaagacttttaaggtgagaagaacaaagaccaaaatcaaaa 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30977644 tcacacaaattcaatatttacatcagtcagactaaacaagaatcattgaaatttgactgtaagacttttaaggtgagaagaacaaagaccaaaatcaaaa 30977743  T
Q  650 tatgattgctaattgataagacatatatataacattatgaaaaagaaatgatgcatatctttgaagatttcatcacttacaatattttctgaattatggt 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30977744 tatgattgctaattgataagacatatatataacattatgaaaaagaaataatgcatatctttgaagatttcatcacttacaatattttctgaatcatggt 30977843  T
Q  750 ttgaaaaatttctaaatcacttgatcattacaagatatatatttagaattcatccaac 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30977844 ttgaaaaatttctaaatcacttgatcattacaagatatatatttagaattcatccaac 30977901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 30977102 - 30977205
Alignment:
Q  10 gacatcatttctgagtcttcctttttattctacacctatttatacttgagtaaatactgtcccacatcccatttttgggggcatatagggaatagagaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30977102 gacatcatttctgagtcttcctttttattctacacctatttatacttgagtaaatactgtcccacatcccatttttgggggcatatagggaatagagaaa 30977201  T
Q  110 tatt 113  Q
    ||||    
T  30977202 tatt 30977205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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