View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538-Insertion-4 (Length: 692)

Name: NF4538-Insertion-4
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538-Insertion-4
NF4538-Insertion-4
[»] chr3 (29 HSPs)
chr3 (6-585)||(31893812-31894392)
chr3 (6-585)||(31684040-31684609)
chr3 (6-240)||(31948098-31948333)
chr3 (6-240)||(31898741-31898976)
chr3 (6-240)||(31914450-31914685)
chr3 (460-585)||(31897375-31897503)
chr3 (460-585)||(31913084-31913212)
chr3 (460-585)||(31946732-31946860)
chr3 (244-318)||(31897932-31898006)
chr3 (244-318)||(31913641-31913715)
chr3 (244-318)||(31947289-31947363)
chr3 (342-378)||(24560294-24560330)
chr3 (341-378)||(21773858-21773895)
chr3 (341-378)||(25655103-25655140)
chr3 (7-60)||(31683953-31684006)
chr3 (7-60)||(31948367-31948420)
chr3 (341-378)||(46204962-46204999)
chr3 (341-381)||(2387888-2387928)
chr3 (341-375)||(651807-651841)
chr3 (344-378)||(14898055-14898089)
chr3 (341-374)||(10748432-10748465)
chr3 (341-378)||(16275836-16275873)
chr3 (341-378)||(27542062-27542099)
chr3 (7-60)||(31894426-31894479)
chr3 (7-60)||(31899010-31899063)
chr3 (7-60)||(31914719-31914772)
chr3 (345-378)||(36569034-36569067)
chr3 (339-380)||(40464000-40464041)
chr3 (341-378)||(41110452-41110489)
[»] chr8 (8 HSPs)
chr8 (341-378)||(6315138-6315175)
chr8 (341-378)||(31543203-31543240)
chr8 (341-378)||(41103637-41103674)
chr8 (341-378)||(42650467-42650504)
chr8 (341-375)||(7503088-7503122)
chr8 (341-375)||(11575540-11575574)
chr8 (341-378)||(30664437-30664474)
chr8 (341-381)||(13405052-13405092)
[»] chr7 (15 HSPs)
chr7 (341-378)||(24970296-24970333)
chr7 (341-378)||(33655239-33655276)
chr7 (341-378)||(34228449-34228486)
chr7 (341-378)||(40196663-40196700)
chr7 (341-378)||(41497088-41497125)
chr7 (341-377)||(17852947-17852983)
chr7 (341-376)||(25887268-25887303)
chr7 (341-378)||(1051629-1051666)
chr7 (341-378)||(43230312-43230349)
chr7 (341-378)||(45940787-45940824)
chr7 (341-378)||(47390931-47390968)
chr7 (341-378)||(48152056-48152093)
chr7 (346-378)||(22163240-22163272)
chr7 (346-378)||(22221948-22221980)
chr7 (341-373)||(39856001-39856033)
[»] chr6 (5 HSPs)
chr6 (341-378)||(5585433-5585470)
chr6 (341-378)||(6034203-6034240)
chr6 (341-378)||(13583795-13583832)
chr6 (341-377)||(2893706-2893742)
chr6 (341-378)||(12811111-12811148)
[»] chr5 (12 HSPs)
chr5 (341-378)||(14681545-14681582)
chr5 (341-381)||(13634787-13634827)
chr5 (344-378)||(10476107-10476141)
chr5 (341-371)||(11419299-11419329)
chr5 (341-378)||(7544212-7544249)
chr5 (341-378)||(8502966-8503003)
chr5 (341-378)||(9798743-9798780)
chr5 (341-378)||(9856956-9856993)
chr5 (341-378)||(10072778-10072815)
chr5 (341-378)||(16938555-16938592)
chr5 (341-378)||(22022926-22022963)
chr5 (346-378)||(10650510-10650542)
[»] chr4 (11 HSPs)
chr4 (341-378)||(6891436-6891473)
chr4 (341-378)||(35248762-35248799)
chr4 (341-378)||(36151652-36151689)
chr4 (341-378)||(45741966-45742003)
chr4 (341-378)||(54935144-54935181)
chr4 (341-381)||(31348449-31348489)
chr4 (341-378)||(26167013-26167050)
chr4 (341-378)||(27735821-27735858)
chr4 (341-378)||(37711219-37711256)
chr4 (341-378)||(47433839-47433876)
chr4 (345-377)||(41174425-41174457)
[»] chr2 (10 HSPs)
chr2 (341-378)||(16565853-16565890)
chr2 (341-378)||(19566952-19566989)
chr2 (341-378)||(28262574-28262611)
chr2 (341-378)||(36347672-36347709)
chr2 (341-378)||(8427002-8427039)
chr2 (341-378)||(15224825-15224862)
chr2 (341-378)||(29525864-29525901)
chr2 (341-378)||(31795900-31795937)
chr2 (341-378)||(36566982-36567019)
chr2 (341-378)||(40022446-40022483)
[»] chr1 (9 HSPs)
chr1 (341-378)||(49946719-49946756)
chr1 (343-378)||(32951449-32951484)
chr1 (341-378)||(2859063-2859100)
chr1 (341-378)||(26940974-26941011)
chr1 (341-378)||(30010408-30010445)
chr1 (341-378)||(38510025-38510062)
chr1 (341-378)||(44211036-44211073)
chr1 (341-378)||(51597744-51597781)
chr1 (341-377)||(12234086-12234122)
[»] scaffold0067 (1 HSPs)
scaffold0067 (342-378)||(39321-39357)
[»] scaffold0294 (1 HSPs)
scaffold0294 (339-378)||(15337-15376)
[»] scaffold0262 (1 HSPs)
scaffold0262 (341-378)||(16427-16464)


Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 6 - 585
Target Start/End: Complemental strand, 31894392 - 31893812
Alignment:
Q  6 cacaaactataaaaagggaagtgtttaatactataggatactacagaccaagtacatttggtataacgaataaaaaaacnnnnnnnn-aataaatgaata 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||    
T  31894392 cacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttttttaataaatgaata 31894293  T
Q  105 aaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31894292 aaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 31894193  T
Q  205 caaaaatatacatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactct 304  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31894192 caaaaatatatatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactct 31894093  T
Q  305 ttctacttactctttctaaatcacgagctacataacataacatgtttttctaaaataaattaaatgtgattgaattaatagaaggtaatttgtaagcaca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31894092 ttctacttactctttctaaatcacgagctacataacataacatgtttttctaaaataaattaaatgtgattgaattaatagaaggtaatttgtaagcaca 31893993  T
Q  405 atcatttctctccatatgtatgagaaatcttgaattgtatgtataaaggaatgtcctatttagccaactattgacaagaaaaagaaaataaaatactcac 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31893992 atcatttctctccatatgtatgagaaatcttgaattgtatgtataaaggaatgtcctatttagccaactattgacaagaaaaagaaaataaaatactcac 31893893  T
Q  505 gctacttctccatgcgatccagcatcatcatcaacgtgtgtagttggtggtgttgccattgcctggagagaagatatacag 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31893892 gctacttctccatgcgatccagcatcatcatcaacgtgtgtagttggtggtgttgccattgcctggagagaagatatacag 31893812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 6 - 585
Target Start/End: Original strand, 31684040 - 31684609
Alignment:
Q  6 cacaaactataaaaagggaagtgtttaatactataggatactacagaccaagtacatttggtataacgaataaaaaaacnnnnnnnnaataaatgaataa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||    
T  31684040 cacaaactataaaaagggaagtgtttaatactataggatactacagaacaagtacatttggtataacgaataaaaaaacttttttttaataaatgaataa 31684139  T
Q  106 aaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgcc 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31684140 aaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgcc 31684239  T
Q  206 aaaaatatacatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactctt 305  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31684240 aaaaatatatatctgcatgaatccatagcatgtcaacaaataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactc-- 31684337  T
Q  306 tctacttactctttctaaatcacgagctacataacataacatgtttttctaaaataaattaaatgtgattgaattaatagaaggtaatttgtaagcacaa 405  Q
               ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31684338 -----------tttctaaatcacgggctgcataacataacatgtttttctaaaataaattaagtgtgattgaattaatagaaggtaatttgtaagcacaa 31684426  T
Q  406 tcatttctctccatatgtatgagaaatcttgaattgtatgtataaaggaatgtcctatttagccaactattgacaagaaaaagaaaataaaatactcacg 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31684427 tcatttctctccatatgtatgagaaatcttgaattgtatgtataaaggaatgtcctatttagccaactattgacaagaaaaagaaaataaaatactcacg 31684526  T
Q  506 ctacttctccatgcgatccag---catcatcatcaacgtgtgtagttggtggtgttgccattgcctggagagaagatatacag 585  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31684527 ctacttctccatgcgatccagcatcatcatcatcaacgtgtgtagttggtggtgttgccattgcctggagagaggatatacag 31684609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 31948333 - 31948098
Alignment:
Q  6 cacaaactataaaaagggaagtgtttaatactataggatactacagaccaagtacatttggtataacgaataaaaaaacnnnnnnnn-aataaatgaata 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||    
T  31948333 cacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttttttaataaatgaata 31948234  T
Q  105 aaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31948233 aaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 31948134  T
Q  205 caaaaatatacatctgcatgaatccatagcatgtca 240  Q
    |||||||||| |||||||||||||||||||||||||    
T  31948133 caaaaatatatatctgcatgaatccatagcatgtca 31948098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 31898976 - 31898741
Alignment:
Q  6 cacaaactataaaaagggaagtgtttaatactataggatactacagaccaagtacatttggtataacgaataaaaaaacnnnnnnnn-aataaatgaata 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||    
T  31898976 cacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttttttaataaatgaata 31898877  T
Q  105 aaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31898876 aaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 31898777  T
Q  205 caaaaatatacatctgcatgaatccatagcatgtca 240  Q
    |||| ||||| |||||||||||||||||||||||||    
T  31898776 caaatatatatatctgcatgaatccatagcatgtca 31898741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 31914685 - 31914450
Alignment:
Q  6 cacaaactataaaaagggaagtgtttaatactataggatactacagaccaagtacatttggtataacgaataaaaaaacnnnnnnnn-aataaatgaata 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||    
T  31914685 cacaaactataaaaagggaagtgtttgatactataggatactacagaacaagtacatttggtataacgaataaaaaaactttttttttaataaatgaata 31914586  T
Q  105 aaaaactttaaaaccacaacatgtataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 204  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31914585 aaaaactttaaaaccacaacatgcataatttttgccaccaatataaacaaagccacaacatgcatgtagaaattacaaaaactttctctagaattcatgc 31914486  T
Q  205 caaaaatatacatctgcatgaatccatagcatgtca 240  Q
    |||| ||||| |||||||||||||||||||||||||    
T  31914485 caaatatatatatctgcatgaatccatagcatgtca 31914450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 460 - 585
Target Start/End: Complemental strand, 31897503 - 31897375
Alignment:
Q  460 ctatttagccaactattgacaagaaaaagaaaataaaatactcacgctacttctccatgcgatccagcatcatc---atcaacgtgtgtagttggtggtg 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  31897503 ctatttagccaactattgacaagaaaaagaaaataaaatactcacgctacttctccatgcgatccagcatcatcatcatcaacgtgtgtagttggtggtg 31897404  T
Q  557 ttgccattgcctggagagaagatatacag 585  Q
    |||||||||||||||||||||||||||||    
T  31897403 ttgccattgcctggagagaagatatacag 31897375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 460 - 585
Target Start/End: Complemental strand, 31913212 - 31913084
Alignment:
Q  460 ctatttagccaactattgacaagaaaaagaaaataaaatactcacgctacttctccatgcgatccagcatcatc---atcaacgtgtgtagttggtggtg 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  31913212 ctatttagccaactattgacaagaaaaagaaaataaaatactcacgctacttctccatgcgatccagcatcatcatcatcaacgtgtgtagttggtggtg 31913113  T
Q  557 ttgccattgcctggagagaagatatacag 585  Q
    |||||||||||||||||||||||||||||    
T  31913112 ttgccattgcctggagagaagatatacag 31913084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 460 - 585
Target Start/End: Complemental strand, 31946860 - 31946732
Alignment:
Q  460 ctatttagccaactattgacaagaaaaagaaaataaaatactcacgctacttctccatgcgatccagcatcatc---atcaacgtgtgtagttggtggtg 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  31946860 ctatttagccaactattgacaagaaaaagaaaataaaatactcacgctacttctccatgcgatccagcatcatcatcatcaacgtgtgtagttggtggtg 31946761  T
Q  557 ttgccattgcctggagagaagatatacag 585  Q
    |||||||||||||||||||||||||||||    
T  31946760 ttgccattgcctggagagaagatatacag 31946732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 31897932 - 31898006
Alignment:
Q  244 aataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactctttctacttactctt 318  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  31897932 aataattaatcacaatcattaattaatattagattcaagggtcatgatttggagtaactctttctacttactctt 31898006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 31913641 - 31913715
Alignment:
Q  244 aataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactctttctacttactctt 318  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  31913641 aataattaatcacaatcattaattaatattagattcaagggtcatgatttggagtaactctttctacttactctt 31913715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 31947289 - 31947363
Alignment:
Q  244 aataattaatcataatcattaattaatattagattcaagggtcacaatttggattaactctttctacttactctt 318  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  31947289 aataattaatcacaatcattaattaatattagattcaagggtcatgatttggagtaactctttctacttactctt 31947363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 24560294 - 24560330
Alignment:
Q  342 taacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||||||||||||||||    
T  24560294 taacatgtttttctaaaataaattaaatgtgattgaa 24560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 21773858 - 21773895
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  21773858 ataacatgtttttctaaaataaattaagtgtgattgaa 21773895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 25655140 - 25655103
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  25655140 ataacatgtttttctaaaataaattaagtgtgattgaa 25655103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 31683953 - 31684006
Alignment:
Q  7 acaaactataaaaagggaagtgtttaatactataggatactacagaccaagtac 60  Q
    ||||||||||||||||| |||||||||||||||| |||| | |||| |||||||    
T  31683953 acaaactataaaaaggggagtgtttaatactataagataatgcagaacaagtac 31684006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31948420 - 31948367
Alignment:
Q  7 acaaactataaaaagggaagtgtttaatactataggatactacagaccaagtac 60  Q
    ||||||||||||||||| |||||||||||||||| |||| | |||| |||||||    
T  31948420 acaaactataaaaaggggagtgtttaatactataagataatgcagaacaagtac 31948367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 46204962 - 46204999
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  46204962 ataacatgtttttctaaaataaattaagtgtgattgaa 46204999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 2387928 - 2387888
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaatta 381  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  2387928 ataacatgtttttctaaaataaattaagtgtgattaaatta 2387888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 375
Target Start/End: Original strand, 651807 - 651841
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgatt 375  Q
    ||||||||||||||||||||||||||| |||||||    
T  651807 ataacatgtttttctaaaataaattaagtgtgatt 651841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 14898055 - 14898089
Alignment:
Q  344 acatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||| ||||||||||    
T  14898055 acatgtttttctaaaataaattaagtgtgattgaa 14898089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 10748465 - 10748432
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgat 374  Q
    ||||||||||||||||||||||||||| ||||||    
T  10748465 ataacatgtttttctaaaataaattaagtgtgat 10748432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 16275873 - 16275836
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||| || ||||||||||    
T  16275873 ataacatgtttttctaaaataaatcaagtgtgattgaa 16275836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 27542099 - 27542062
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  27542099 ataacatatttttctaaaataaattaactgtgattgaa 27542062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31894479 - 31894426
Alignment:
Q  7 acaaactataaaaagggaagtgtttaatactataggatactacagaccaagtac 60  Q
    ||||||||| ||||||| |||||||||||||||| |||| | |||| |||||||    
T  31894479 acaaactatgaaaaggggagtgtttaatactataagataatgcagaacaagtac 31894426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31899063 - 31899010
Alignment:
Q  7 acaaactataaaaagggaagtgtttaatactataggatactacagaccaagtac 60  Q
    ||||||||| ||||||| |||||||||||||||| |||| | |||| |||||||    
T  31899063 acaaactatgaaaaggggagtgtttaatactataagataatgcagaacaagtac 31899010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31914772 - 31914719
Alignment:
Q  7 acaaactataaaaagggaagtgtttaatactataggatactacagaccaagtac 60  Q
    ||||||||| ||||||| |||||||||||||||| |||| | |||| |||||||    
T  31914772 acaaactatgaaaaggggagtgtttaatactataagataatgcagaacaagtac 31914719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 36569067 - 36569034
Alignment:
Q  345 catgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||| ||||||||||    
T  36569067 catgtttttctaaaataaattaagtgtgattgaa 36569034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 40464041 - 40464000
Alignment:
Q  339 acataacatgtttttctaaaataaattaaatgtgattgaatt 380  Q
    ||||||||| ||||||||||||||||||| || |||||||||    
T  40464041 acataacatatttttctaaaataaattaagtgagattgaatt 40464000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 41110489 - 41110452
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  41110489 ataacatgtttttcgaaaataaattaagtgtgattgaa 41110452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 6315138 - 6315175
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  6315138 ataacatgtttttctaaaataaattaagtgtgattgaa 6315175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 31543240 - 31543203
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31543240 ataacatgtttttctaaaataaattaagtgtgattgaa 31543203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 41103674 - 41103637
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  41103674 ataacatgtttttctaaaataaattaagtgtgattgaa 41103637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 42650504 - 42650467
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  42650504 ataacatgtttttctaaaataaattaagtgtgattgaa 42650467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 7503122 - 7503088
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgatt 375  Q
    ||||||||||||||||||||||||||| |||||||    
T  7503122 ataacatgtttttctaaaataaattaagtgtgatt 7503088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 11575574 - 11575540
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgatt 375  Q
    ||||||||||||||||||||||||||| |||||||    
T  11575574 ataacatgtttttctaaaataaattaagtgtgatt 11575540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 30664437 - 30664474
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  30664437 ataacatgtttttcaaaaataaattaagtgtgattgaa 30664474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 13405052 - 13405092
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaatta 381  Q
    |||||||||||||||||||||||||| || | |||||||||    
T  13405052 ataacatgtttttctaaaataaattatatataattgaatta 13405092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 24970333 - 24970296
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24970333 ataacatgtttttctaaaataaattaagtgtgattgaa 24970296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 33655276 - 33655239
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  33655276 ataacatgtttttctaaaataaattaagtgtgattgaa 33655239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 34228486 - 34228449
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  34228486 ataacatgtttttctaaaataaattaagtgtgattgaa 34228449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 40196700 - 40196663
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  40196700 ataacatgtttttctaaaataaattaagtgtgattgaa 40196663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 41497125 - 41497088
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  41497125 ataacatgtttttctaaaataaattaagtgtgattgaa 41497088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 17852947 - 17852983
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattga 377  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17852947 ataacatgtttttctaaaataaattaagtgtgattga 17852983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 376
Target Start/End: Original strand, 25887268 - 25887303
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattg 376  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25887268 ataacatgtttttctaaaataaattaagtgtgattg 25887303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 1051666 - 1051629
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  1051666 ataacctgtttttctaaaataaattaagtgtgattgaa 1051629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 43230312 - 43230349
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| || |||||||    
T  43230312 ataacatgtttttctaaaataaattaagtgcgattgaa 43230349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 45940824 - 45940787
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  45940824 ataacatatttttctaaaataaattaaatgtaattgaa 45940787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 47390931 - 47390968
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  47390931 ataacatgtttttctaaaatacattaattgtgattgaa 47390968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 48152056 - 48152093
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  48152056 ataacatgtttttctaaaataaatttagtgtgattgaa 48152093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 22163272 - 22163240
Alignment:
Q  346 atgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||| ||||||||||    
T  22163272 atgtttttctaaaataaattaagtgtgattgaa 22163240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 22221980 - 22221948
Alignment:
Q  346 atgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||| ||||||||||    
T  22221980 atgtttttctaaaataaattaagtgtgattgaa 22221948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 39856033 - 39856001
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtga 373  Q
    ||||||||||||||||||||||||||| |||||    
T  39856033 ataacatgtttttctaaaataaattaagtgtga 39856001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 5585470 - 5585433
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  5585470 ataacatgtttttctaaaataaattaagtgtgattgaa 5585433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 6034240 - 6034203
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  6034240 ataacatgtttttctaaaataaattaagtgtgattgaa 6034203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 13583795 - 13583832
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  13583795 ataacatgtttttctaaaataaattaagtgtgattgaa 13583832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 2893706 - 2893742
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattga 377  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2893706 ataacatgtttttctaaaataaattaagtgtgattga 2893742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 12811148 - 12811111
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  12811148 ataatatgtttttctaaaataaattaagtgtgattgaa 12811111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 14681545 - 14681582
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14681545 ataacatgtttttttaaaataaattaaatgtgattgaa 14681582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 13634787 - 13634827
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaatta 381  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  13634787 ataacatgtttttctaaaataaattatgtgtgattgaatta 13634827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 10476107 - 10476141
Alignment:
Q  344 acatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||| ||||||||||    
T  10476107 acatgtttttctaaaataaattaagtgtgattgaa 10476141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 371
Target Start/End: Complemental strand, 11419329 - 11419299
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgt 371  Q
    |||||||||||||||||||||||||||||||    
T  11419329 ataacatgtttttctaaaataaattaaatgt 11419299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 7544212 - 7544249
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||| || ||||||||||    
T  7544212 ataacatgtttttctaaaataaatcaagtgtgattgaa 7544249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 8503003 - 8502966
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  8503003 ataacatgcttttctaaaataaattaagtgtgattgaa 8502966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 9798780 - 9798743
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  9798780 ataacatgtttttcttaaataaattaattgtgattgaa 9798743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 9856956 - 9856993
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||| || ||||||||||    
T  9856956 ataacatgtttttctaaaataaatcaagtgtgattgaa 9856993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 10072815 - 10072778
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  10072815 ataacatgtttttctaaaataaattaagtatgattgaa 10072778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 16938555 - 16938592
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  16938555 ataacatgtttctctaaaataaattaagtgtgattgaa 16938592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 22022926 - 22022963
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  22022926 ataacatatttttctaaaataaattaagtgtgattgaa 22022963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 10650510 - 10650542
Alignment:
Q  346 atgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||| ||||||||||    
T  10650510 atgtttttctaaaataaattaagtgtgattgaa 10650542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 6891436 - 6891473
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  6891436 ataacatgtttttctaaaataaattaagtgtgattgaa 6891473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 35248762 - 35248799
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  35248762 ataacatgtttttctaaaataaattaagtgtgattgaa 35248799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 36151652 - 36151689
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36151652 ataacatgtttttctaaaataaattaagtgtgattgaa 36151689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 45741966 - 45742003
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  45741966 ataacttgtttttctaaaataaattaaatgtgattgaa 45742003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 54935144 - 54935181
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  54935144 ataacatgtttttctaaaataaattaagtgtgattgaa 54935181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 31348489 - 31348449
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaatta 381  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  31348489 ataacatgtttttctaaaataaattatgtgtgattgaatta 31348449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 26167013 - 26167050
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  26167013 ataacatgtttctctaaaataaattaagtgtgattgaa 26167050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 27735821 - 27735858
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  27735821 ataacatgtttttttaaaataaattaagtgtgattgaa 27735858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 37711219 - 37711256
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  37711219 ataacatgtttctctaaaataaattaagtgtgattgaa 37711256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 47433876 - 47433839
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  47433876 ataacatgtttttttaaaataaattaagtgtgattgaa 47433839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 41174425 - 41174457
Alignment:
Q  345 catgtttttctaaaataaattaaatgtgattga 377  Q
    |||||||||||||||||||| ||||||||||||    
T  41174425 catgtttttctaaaataaatcaaatgtgattga 41174457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 16565853 - 16565890
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16565853 ataacatgtttttctaaaataaattaagtgtgattgaa 16565890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 19566989 - 19566952
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  19566989 ataacatgtttttctaaaataaattaagtgtgattgaa 19566952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 28262611 - 28262574
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||||| |||||||||||    
T  28262611 ataacatgtttttctaaaataaattacatgtgattgaa 28262574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 36347709 - 36347672
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36347709 ataacatgtttttctaaaataaattaagtgtgattgaa 36347672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 8427039 - 8427002
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| || |||||||    
T  8427039 ataacatgtttttctaaaataaattaagtgcgattgaa 8427002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 15224862 - 15224825
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  15224862 ataacatgtttttctagaataaattaagtgtgattgaa 15224825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 29525901 - 29525864
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  29525901 ataatatgtttttttaaaataaattaaatgtgattgaa 29525864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 31795937 - 31795900
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  31795937 ataacatgtttttttaaaataaattaagtgtgattgaa 31795900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 36567019 - 36566982
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  36567019 ataacatgtttttctataataaattaattgtgattgaa 36566982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 40022446 - 40022483
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  40022446 ataacatgtttttgtaaaataaattaagtgtgattgaa 40022483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 49946756 - 49946719
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  49946756 ataacatgtttttttaaaataaattaaatgtgattgaa 49946719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 32951484 - 32951449
Alignment:
Q  343 aacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32951484 aacatgtttttctaaaataaattaagtgtgattgaa 32951449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 2859100 - 2859063
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  2859100 ataacatgtttttcaaaaataaattaagtgtgattgaa 2859063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 26941011 - 26940974
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||| || ||||||||||    
T  26941011 ataacatgtttttctaaaataaatcaagtgtgattgaa 26940974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 30010408 - 30010445
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  30010408 ataacatgtttttctaaaataaattaagtgtggttgaa 30010445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 38510062 - 38510025
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||| || ||||||||||    
T  38510062 ataacatgtttttctaaaataaatcaagtgtgattgaa 38510025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 44211073 - 44211036
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  44211073 ataacgtgtttttctaaaataaattaagtgtgattgaa 44211036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 51597744 - 51597781
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  51597744 ataacatgtttttttaaaataaattaagtgtgattgaa 51597781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 12234086 - 12234122
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattga 377  Q
    |||||||||||||||||||||||| || |||||||||    
T  12234086 ataacatgtttttctaaaataaatcaagtgtgattga 12234122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 39357 - 39321
Alignment:
Q  342 taacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    |||||||||||||||||||||||||| ||||||||||    
T  39357 taacatgtttttctaaaataaattaagtgtgattgaa 39321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 15337 - 15376
Alignment:
Q  339 acataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  15337 acataacatgtttttctaaaataaattaagtgtggttgaa 15376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 16464 - 16427
Alignment:
Q  341 ataacatgtttttctaaaataaattaaatgtgattgaa 378  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  16464 ataacatgtttgtctaaaataaattaagtgtgattgaa 16427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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