View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538-Insertion-6 (Length: 498)
Name: NF4538-Insertion-6
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538-Insertion-6 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 498
Target Start/End: Original strand, 34933192 - 34933674
Alignment:
| Q |
7 |
acctgcaaccctagaagaagaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgagcctctctattta |
106 |
Q |
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| T |
34933192 |
acctgcaaccctagaagaacaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgagcctctctattta |
34933291 |
T |
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| Q |
107 |
tgaatgaacatgtgccatttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattgttttcatgccttcattacttgaaatc |
206 |
Q |
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| T |
34933292 |
tgaatgaacatgtgccctttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattgttttcaagccttcattacttgaaatc |
34933391 |
T |
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| Q |
207 |
attccatgagagaacaacagaaagagacatatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatg |
306 |
Q |
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| T |
34933392 |
attccatgagagaacaacagaaagagacatatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtg |
34933491 |
T |
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| Q |
307 |
aagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctac |
406 |
Q |
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| T |
34933492 |
aagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaattcttctcattctac |
34933582 |
T |
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| Q |
407 |
ttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagataccttggagcttcttcttcttctacaac |
498 |
Q |
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| T |
34933583 |
ttataagaagcttcaaccctagagattacgaacgaaaactatcatgcaatgaaaatacatagatacgttggagcttcttcttcttctacaac |
34933674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 287 - 490
Target Start/End: Original strand, 34926958 - 34927161
Alignment:
| Q |
287 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
386 |
Q |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
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| Q |
387 |
acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagataccttggagcttcttc |
486 |
Q |
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| T |
34927058 |
acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaattacatagataccttcaagcttcttc |
34927157 |
T |
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| Q |
487 |
ttct |
490 |
Q |
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| T |
34927158 |
ttct |
34927161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 34926734 - 34926816
Alignment:
| Q |
10 |
tgcaaccctagaagaagaagtgt--gtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcc |
90 |
Q |
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| T |
34926734 |
tgcaacccgagaagaacaagtgtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatatttccaaacccaagcc |
34926816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 34926842 - 34926885
Alignment:
| Q |
147 |
ctctcctgttcttttttgtaagtgtttttcattgttttcatgcct |
191 |
Q |
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| T |
34926842 |
ctctcctgttctttt-tgtaagtgtttttcattgttttcatgcct |
34926885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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