View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538-Insertion-7 (Length: 487)

Name: NF4538-Insertion-7
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538-Insertion-7
NF4538-Insertion-7
[»] chr5 (29 HSPs)
chr5 (96-346)||(15036915-15037149)
chr5 (96-346)||(15039412-15039646)
chr5 (96-346)||(15041909-15042143)
chr5 (6-101)||(15037193-15037288)
chr5 (6-101)||(15039690-15039785)
chr5 (6-101)||(15042187-15042282)
chr5 (266-342)||(15044366-15044442)
chr5 (272-394)||(20854843-20854966)
chr5 (302-398)||(235578-235676)
chr5 (302-398)||(236896-236994)
chr5 (330-398)||(17071210-17071279)
chr5 (332-398)||(7632081-7632148)
chr5 (356-398)||(237844-237886)
chr5 (356-398)||(19128756-19128798)
chr5 (356-398)||(19359690-19359732)
chr5 (356-398)||(28705902-28705944)
chr5 (27-92)||(20854459-20854524)
chr5 (330-398)||(34600247-34600316)
chr5 (332-398)||(36038681-36038748)
chr5 (356-398)||(1281822-1281864)
chr5 (356-398)||(10554508-10554550)
chr5 (358-400)||(19366591-19366633)
chr5 (171-225)||(27363870-27363924)
chr5 (356-398)||(38056780-38056822)
chr5 (368-398)||(43510975-43511005)
chr5 (335-398)||(29046014-29046079)
chr5 (363-398)||(17071824-17071860)
chr5 (358-398)||(27364512-27364552)
chr5 (356-396)||(28705153-28705193)
[»] chr1 (34 HSPs)
chr1 (178-383)||(168891-169090)
chr1 (272-376)||(46812126-46812231)
chr1 (241-346)||(11704122-11704227)
chr1 (326-398)||(49680797-49680870)
chr1 (355-398)||(36390390-36390433)
chr1 (332-398)||(11704807-11704874)
chr1 (355-398)||(12760762-12760805)
chr1 (309-389)||(10120778-10120860)
chr1 (356-398)||(13142691-13142733)
chr1 (356-398)||(17172686-17172728)
chr1 (356-398)||(25733204-25733246)
chr1 (335-398)||(30932797-30932862)
chr1 (335-398)||(4433849-4433913)
chr1 (335-398)||(7406231-7406295)
chr1 (332-398)||(7558434-7558502)
chr1 (366-398)||(36688402-36688434)
chr1 (332-398)||(7559198-7559265)
chr1 (356-398)||(24991956-24991998)
chr1 (356-398)||(25468496-25468538)
chr1 (356-398)||(27256736-27256778)
chr1 (330-387)||(30663355-30663413)
chr1 (356-398)||(46391890-46391932)
chr1 (335-387)||(10121554-10121607)
chr1 (335-387)||(13262830-13262883)
chr1 (356-397)||(28182096-28182137)
chr1 (330-398)||(34309227-34309296)
chr1 (27-92)||(46811728-46811793)
chr1 (335-398)||(169629-169693)
chr1 (335-398)||(4439208-4439272)
chr1 (335-398)||(8987776-8987840)
chr1 (355-398)||(17171916-17171960)
chr1 (356-396)||(19172599-19172639)
chr1 (366-398)||(26119428-26119460)
chr1 (366-398)||(31572480-31572512)
[»] chr2 (23 HSPs)
chr2 (406-476)||(3910729-3910799)
chr2 (302-398)||(1297090-1297188)
chr2 (302-394)||(9275577-9275671)
chr2 (338-398)||(12725619-12725680)
chr2 (355-398)||(11751091-11751134)
chr2 (356-398)||(20432391-20432433)
chr2 (335-398)||(29559421-29559485)
chr2 (355-398)||(22301181-22301224)
chr2 (355-398)||(27177899-27177942)
chr2 (326-395)||(9276322-9276392)
chr2 (356-398)||(23857047-23857089)
chr2 (335-398)||(29512358-29512422)
chr2 (335-398)||(29719433-29719497)
chr2 (355-398)||(9540318-9540361)
chr2 (332-398)||(15902107-15902174)
chr2 (326-398)||(1296365-1296439)
chr2 (330-398)||(11750243-11750313)
chr2 (330-391)||(18174666-18174728)
chr2 (356-398)||(36238753-36238795)
chr2 (326-398)||(15774190-15774262)
chr2 (357-398)||(24121314-24121355)
chr2 (366-398)||(19428188-19428220)
chr2 (355-391)||(26752021-26752057)
[»] chr7 (32 HSPs)
chr7 (272-396)||(46428175-46428300)
chr7 (326-398)||(37950460-37950533)
chr7 (329-398)||(3772522-3772592)
chr7 (326-398)||(27948432-27948505)
chr7 (302-392)||(25343295-25343387)
chr7 (302-398)||(25342482-25342581)
chr7 (356-398)||(16664149-16664191)
chr7 (356-398)||(17638509-17638551)
chr7 (272-342)||(23902662-23902732)
chr7 (326-398)||(30660578-30660652)
chr7 (356-398)||(37395523-37395565)
chr7 (356-398)||(45099917-45099959)
chr7 (330-398)||(30661452-30661521)
chr7 (361-398)||(33781585-33781622)
chr7 (28-92)||(23902331-23902395)
chr7 (335-398)||(45161955-45162019)
chr7 (332-398)||(3688370-3688437)
chr7 (355-398)||(38225286-38225329)
chr7 (363-398)||(47171437-47171472)
chr7 (356-398)||(3903363-3903405)
chr7 (356-398)||(13785617-13785659)
chr7 (356-398)||(14305076-14305118)
chr7 (356-398)||(19068419-19068461)
chr7 (337-398)||(24453730-24453792)
chr7 (310-398)||(18977746-18977834)
chr7 (311-398)||(37706413-37706502)
chr7 (316-387)||(40273557-40273630)
chr7 (335-398)||(7668469-7668532)
chr7 (366-398)||(9749902-9749934)
chr7 (332-383)||(14686132-14686184)
chr7 (363-395)||(15305296-15305328)
chr7 (355-398)||(46428840-46428884)
[»] chr4 (32 HSPs)
chr4 (272-387)||(47785738-47785854)
chr4 (326-398)||(26147025-26147098)
chr4 (332-397)||(2446160-2446226)
chr4 (356-398)||(31329741-31329783)
chr4 (330-398)||(47688476-47688546)
chr4 (356-398)||(53773610-53773652)
chr4 (330-398)||(7841531-7841600)
chr4 (330-398)||(12920271-12920340)
chr4 (330-398)||(20774177-20774246)
chr4 (357-398)||(40495082-40495123)
chr4 (363-396)||(47687898-47687931)
chr4 (366-398)||(46169014-46169046)
chr4 (355-398)||(142547-142590)
chr4 (328-398)||(52871285-52871356)
chr4 (356-398)||(53772793-53772836)
chr4 (306-383)||(5046455-5046533)
chr4 (356-398)||(8248544-8248586)
chr4 (356-398)||(8266209-8266251)
chr4 (356-398)||(12368679-12368721)
chr4 (320-381)||(16903630-16903692)
chr4 (356-398)||(16903692-16903734)
chr4 (368-398)||(43147273-43147303)
chr4 (356-398)||(53732422-53732464)
chr4 (326-398)||(11938698-11938771)
chr4 (311-387)||(32089591-32089668)
chr4 (310-382)||(56262481-56262554)
chr4 (366-398)||(1466027-1466059)
chr4 (366-398)||(3654020-3654052)
chr4 (358-398)||(5591057-5591097)
chr4 (366-398)||(24008380-24008412)
chr4 (366-398)||(44470160-44470192)
chr4 (358-398)||(48127273-48127313)
[»] chr3 (22 HSPs)
chr3 (178-346)||(29853983-29854159)
chr3 (355-398)||(13477044-13477087)
chr3 (356-398)||(48648190-48648232)
chr3 (357-398)||(6775255-6775296)
chr3 (333-397)||(14871141-14871206)
chr3 (27-92)||(29854365-29854430)
chr3 (310-398)||(37988195-37988284)
chr3 (355-398)||(20212967-20213010)
chr3 (309-398)||(54458640-54458731)
chr3 (355-397)||(8949923-8949965)
chr3 (356-398)||(21726754-21726796)
chr3 (356-398)||(21727553-21727595)
chr3 (329-398)||(48764464-48764534)
chr3 (310-382)||(48507009-48507082)
chr3 (355-392)||(52605506-52605543)
chr3 (335-398)||(264454-264517)
chr3 (296-398)||(23706765-23706868)
chr3 (296-398)||(23725221-23725324)
chr3 (296-398)||(23743677-23743780)
chr3 (335-398)||(31115601-31115665)
chr3 (335-398)||(31974638-31974702)
chr3 (365-393)||(43202830-43202858)
[»] chr8 (16 HSPs)
chr8 (302-398)||(38576269-38576367)
chr8 (326-398)||(8996966-8997039)
chr8 (335-398)||(41974627-41974691)
chr8 (355-398)||(27441453-27441496)
chr8 (355-398)||(27442163-27442206)
chr8 (313-387)||(31602014-31602090)
chr8 (355-398)||(9197082-9197125)
chr8 (356-398)||(3165145-3165187)
chr8 (356-398)||(3291557-3291599)
chr8 (329-398)||(31642082-31642152)
chr8 (357-398)||(39860097-39860138)
chr8 (356-392)||(14825636-14825672)
chr8 (366-398)||(14826195-14826227)
chr8 (366-398)||(28930864-28930896)
chr8 (366-398)||(32979059-32979091)
chr8 (311-398)||(37064804-37064891)
[»] chr6 (13 HSPs)
chr6 (329-398)||(26528809-26528879)
chr6 (329-398)||(10171262-10171332)
chr6 (357-398)||(25060802-25060843)
chr6 (335-398)||(19310987-19311051)
chr6 (329-398)||(10171961-10172032)
chr6 (329-398)||(12344880-12344950)
chr6 (335-398)||(19323768-19323832)
chr6 (366-398)||(21133260-21133292)
chr6 (366-398)||(25061583-25061615)
chr6 (329-398)||(26529508-26529579)
chr6 (367-398)||(33435326-33435357)
chr6 (365-398)||(18227718-18227751)
chr6 (366-398)||(4940258-4940290)
[»] scaffold0504 (1 HSPs)
scaffold0504 (339-398)||(5385-5445)
[»] scaffold0002 (1 HSPs)
scaffold0002 (320-398)||(428888-428968)
[»] scaffold0176 (2 HSPs)
scaffold0176 (356-398)||(26578-26620)
scaffold0176 (358-398)||(27552-27592)
[»] scaffold0086 (1 HSPs)
scaffold0086 (356-398)||(8315-8357)
[»] scaffold0418 (1 HSPs)
scaffold0418 (357-398)||(6909-6950)
[»] scaffold2007 (1 HSPs)
scaffold2007 (335-398)||(737-801)
[»] scaffold0096 (1 HSPs)
scaffold0096 (356-398)||(39882-39924)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 5e-85; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 96 - 346
Target Start/End: Complemental strand, 15037149 - 15036915
Alignment:
Q  96 aaaaaccgtttaaataaatttaattagtggccaatttttt-agtagagtaaaatcacaatcaggtatggacgaggaggttatagtgtaattgaaatcgat 194  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||| ||||                  
T  15037149 aaaaaccgtttaaataaatttaattagtggccaatttttttagtacagtaaaatcacaatcaggtatgaacaaggaggttacagtg-------------- 15037064  T
Q  195 gaacaggacatacatgcttccactgtttgcttcctttgttcctcataacacattcagcggcaaaacattgcatgaaagaaaagctcacgcgagttcacta 294  Q
       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15037063 ---caggacatgcatgcttccactgtttgcttcctttgttcctcataacacattcagcggcaaaacattgcatgaaagaaaagctcacacgagttcacta 15036967  T
Q  295 caccaacaatatgtgcctttggattaaatagattgacggatgagatttggtg 346  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15036966 caccaacaatatgtgcctttggattaaatagattgagggatgagatttggtg 15036915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 96 - 346
Target Start/End: Complemental strand, 15039646 - 15039412
Alignment:
Q  96 aaaaaccgtttaaataaatttaattagtggccaatttttt-agtagagtaaaatcacaatcaggtatggacgaggaggttatagtgtaattgaaatcgat 194  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||| ||||                  
T  15039646 aaaaaccgtttaaataaatttaattagtggccaatttttttagtacagtaaaatcacaatcaggtatgaacaaggaggttacagtg-------------- 15039561  T
Q  195 gaacaggacatacatgcttccactgtttgcttcctttgttcctcataacacattcagcggcaaaacattgcatgaaagaaaagctcacgcgagttcacta 294  Q
       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15039560 ---caggacatgcatgcttccactgtttgcttcctttgttcctcataacacattcagcggcaaaacattgcatgaaagaaaagctcacacgagttcacta 15039464  T
Q  295 caccaacaatatgtgcctttggattaaatagattgacggatgagatttggtg 346  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15039463 caccaacaatatgtgcctttggattaaatagattgagggatgagatttggtg 15039412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 96 - 346
Target Start/End: Complemental strand, 15042143 - 15041909
Alignment:
Q  96 aaaaaccgtttaaataaatttaattagtggccaatttttt-agtagagtaaaatcacaatcaggtatggacgaggaggttatagtgtaattgaaatcgat 194  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||| ||||                  
T  15042143 aaaaaccgtttaaataaatttaattagtggccaatttttttagtatagtaaaatcacaatcaggtatgaacaaggaggttacagtg-------------- 15042058  T
Q  195 gaacaggacatacatgcttccactgtttgcttcctttgttcctcataacacattcagcggcaaaacattgcatgaaagaaaagctcacgcgagttcacta 294  Q
       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15042057 ---caggacatgcatgcttccactgtttgcttcctttgttcctcataacacattcagcggcaaaacattgcatgaaagaaaagctcacacgagttcacta 15041961  T
Q  295 caccaacaatatgtgcctttggattaaatagattgacggatgagatttggtg 346  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15041960 caccaacaatatgtgcctttggattaaatagattgagggatgagatttggtg 15041909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 15037288 - 15037193
Alignment:
Q  6 caatatcctccttgtttttctaatcgatatggtaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttctctaaaaaac 101  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15037288 caatatcctccttgtttttctaatggatatggaaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttctctgaaaaac 15037193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 15039785 - 15039690
Alignment:
Q  6 caatatcctccttgtttttctaatcgatatggtaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttctctaaaaaac 101  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15039785 caatatcctccttgtttttctaatggatatggaaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttctctgaaaaac 15039690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 15042282 - 15042187
Alignment:
Q  6 caatatcctccttgtttttctaatcgatatggtaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttctctaaaaaac 101  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15042282 caatatcctccttgtttttctaatagatatggaaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttctctgaaaaac 15042187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 15044442 - 15044366
Alignment:
Q  266 atgaaagaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagattt 342  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15044442 atgaaagaaaagctcacacgagttcactacaccaacaatatgtgcctttggattaaatagattgagggatgagattt 15044366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 394
Target Start/End: Original strand, 20854843 - 20854966
Alignment:
Q  272 gaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtg 370  Q
    ||||| ||||||| ||||||||||||||| ||| |||| ||||||| | ||||||| ||||| | |||||||||| || | ||| | || | ||||||||    
T  20854843 gaaaaactcacgctagttcactacaccaataatttgtgactttggaatgaatagatagacggttcagatttggtgtcaacgaatccattaacacctggtg 20854942  T
Q  371 tcaacggatcctaactcatatata 394  Q
    |||||||||| || ||||||||||    
T  20854943 tcaacggatcatatctcatatata 20854966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 235676 - 235578
Alignment:
Q  302 aatatgtgcctttggattaaat-agattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||| |||||||| | || ||||| |||||||||||| || | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  235676 aatatgagccttttgattaaatgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactcatatatatata 235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 236896 - 236994
Alignment:
Q  302 aatatgtgcctttggattaaat-agattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||| |||||||| | || ||||| |||||||||||| |  | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  236896 aatatgagccttttgattaaatgaaatagacggttgagatttggtgtctacgaatccgttgacacctggtgtcaatggatcctaactcatatatatata 236994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 17071279 - 17071210
Alignment:
Q  330 acggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||| || | ||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  17071279 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactcatatatatata 17071210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 7632148 - 7632081
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||| || | |||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  7632148 ggataagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctatctcatatatatata 7632081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 237844 - 237886
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  237844 cgttgacacctggtgtcaacggatcctgactcatatatatata 237886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 19128798 - 19128756
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  19128798 cgttgacacctggtgtcaacggatcctgactcatatatatata 19128756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 19359732 - 19359690
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  19359732 cgttgacacctggtgtcaacggatcctgactcatatatatata 19359690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 28705902 - 28705944
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  28705902 cgttgacacctggtgtcaacggatcctgactcatatatatata 28705944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 20854459 - 20854524
Alignment:
Q  27 aatcgatatggtaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttct 92  Q
    |||| |||||| || |||||||||||||||| ||||| | ||| ||||||||| ||||||||||||    
T  20854459 aatcaatatggaaaatctctatgagcaattttatggaaacgtgattttgaaattcgttagtgttct 20854524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 34600316 - 34600247
Alignment:
Q  330 acggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||| || | ||| |||||| ||||| |||||||||||||||||| |||||||||||    
T  34600316 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaacttatatatatata 34600247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 36038748 - 36038681
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||  | | |||| |||||||||||||||||||||||||   ||||||||||||||    
T  36038748 ggatgagatttggtgttaacgaatccgttgatacctggtgtcaacggatcccctctcatatatatata 36038681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 1281864 - 1281822
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||| |||||||| ||||||||||||||    
T  1281864 cgttgacacctggtgtcaatggatcctatctcatatatatata 1281822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 10554550 - 10554508
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  10554550 cgttgacacctggtgtcaacggatcctgtctcatatatatata 10554508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 19366591 - 19366633
Alignment:
Q  358 ttgatacctggtgtcaacggatcctaactcatatatatataca 400  Q
    |||| |||||||||||||||||||||||||||| | |||||||    
T  19366591 ttgacacctggtgtcaacggatcctaactcataaaaatataca 19366633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 27363924 - 27363870
Alignment:
Q  171 ggttatagtgtaattgaaatcgatgaacaggacatacatgcttccactgtttgct 225  Q
    |||||| |||||||||||||  ||||||| |||| |||||||||||| |||||||    
T  27363924 ggttattgtgtaattgaaatacatgaacatgacacacatgcttccaccgtttgct 27363870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 38056822 - 38056780
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||    
T  38056822 cgttgacacctggtgtcaacagatcctatctcatatatatata 38056780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Original strand, 43510975 - 43511005
Alignment:
Q  368 gtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||||||||||||||||    
T  43510975 gtgtcaacggatcctaactcatatatatata 43511005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 29046079 - 29046014
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  29046079 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatata 29046014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 17071824 - 17071860
Alignment:
Q  363 acctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17071824 acctggtgtcaacggatcctaactctatatatatata 17071860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 27364512 - 27364552
Alignment:
Q  358 ttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  27364512 ttgacacctggtgtcaacggatcctgtctcatatatatata 27364552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 28705193 - 28705153
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatata 396  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  28705193 cgttgacacctggtgtcaacggatactgactcatatatata 28705153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 383
Target Start/End: Complemental strand, 169090 - 168891
Alignment:
Q  178 gtgtaattgaaatcgatgaacaggacatacatgcttccactgtttgcttcctttgttcctcataacacattcagcggcaaaacattgcatgaaagaaaag 277  Q
    |||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||  |||| |  | ||||||    
T  169090 gtgtaattgaaatccatgaacatgacacacatgcttccactgtttgcttcccttgttgctcgtaacacattcagcggcgaaaatttgcgtagaggaaaag 168991  T
Q  278 ctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagatttggtg-ccatcaaatcgttgatacctggtgtcaacg 376  Q
    |||       ||||||||||| ||||| ||||||||||||||||||||||  |||| |||||||||||| | || ||  || ||| ||||||||||||||    
T  168990 ctc-------ttcactacacccacaatttgtgcctttggattaaatagataaacggttgagatttggtgtcaatgaatccgctgacacctggtgtcaacg 168898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 46812126 - 46812231
Alignment:
Q  272 gaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtg 370  Q
    ||||| ||||||| ||||||||||||||| ||| ||||||||| |||||||||||| ||||| |||||||||||| || | ||| |||||| ||||||||    
T  46812126 gaaaaactcacgctagttcactacaccaataatctgtgcctttagattaaatagatagacggttgagatttggtgtcaacgaatccgttgacacctggtg 46812225  T
Q  371 tcaacg 376  Q
    | ||||    
T  46812226 ttaacg 46812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 11704227 - 11704122
Alignment:
Q  241 aacacattcagcggcaaaacattgcatgaaagaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagat 340  Q
    |||||| || |||||||||| |||| |  | ||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||| || || ||| ||    
T  11704227 aacacagtcggcggcaaaacgttgcgtacaggaaaacctcacgccagttcactacaccattaatatgtgcctttggattaaatagatagatggttgaaat 11704128  T
Q  341 ttggtg 346  Q
    ||||||    
T  11704127 ttggtg 11704122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 49680870 - 49680797
Alignment:
Q  326 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| ||||||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  49680870 attgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 49680797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 36390390 - 36390433
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  36390390 tcgttgacacctggtgtcaacggatcctaactcatatatatata 36390433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 11704807 - 11704874
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||| || | |||| ||||| || ||||||||| |||||||||||||||||||||||    
T  11704807 ggatgagatttggtgtcaacgaatccgttgacacttggtgtcaatggatcctaactcatatatatata 11704874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 12760805 - 12760762
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  12760805 tcgttgacaccaggtgtcaacggatcctaactcatatatatata 12760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 10120860 - 10120778
Alignment:
Q  309 gcctttggattaa-atagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcat 389  Q
    ||||||||||||| ||| |||||||||   ||||||||| || | |||| ||||| |||||||||||||||||||||||||||    
T  10120860 gcctttggattaacataaattgacggaaaggatttggtgtcaaccaatccgttgacacctggtgtcaacggatcctaactcat 10120778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 13142691 - 13142733
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  13142691 cgttgacacctggtgtcaagggatcctaactcatatatatata 13142733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 17172686 - 17172728
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  17172686 cgttgacacctggtgtcaacggatcctatctcatatatatata 17172728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 25733204 - 25733246
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  25733204 cgttgatacctgatgtcaacggatcttaactcatatatatata 25733246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 30932797 - 30932862
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||||||||||||| | |||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  30932797 tgagatttggtgccaacgaatccgttgacacctggtgtcaacggatcctcactctatatatatata 30932862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 4433849 - 4433913
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| ||||||||||||||||||||| || |||||||||||    
T  4433849 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctatcttatatatatata 4433913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 7406295 - 7406231
Alignment:
Q  335 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | ||| |||| | |||||||||||||||||||| |||||||||||||||    
T  7406295 tgagatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctgactcatatatatata 7406231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 7558502 - 7558434
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||||||||||||| || |||||| ||||| || |||||||||||||||||| ||| |||||||||||    
T  7558502 ggatgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatcctatctctatatatatata 7558434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 36688434 - 36688402
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||||||||||||||||||    
T  36688434 tggtgtcaacggatcctaactcatatatatata 36688402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 7559198 - 7559265
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||| || |  ||| ||||| ||||||||||||||||||||  ||||||||||||||    
T  7559198 ggatgagatttggtgtcaacggatccgttgacacctggtgtcaacggatcctgtctcatatatatata 7559265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 24991998 - 24991956
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||| |||||||| ||||||||||||||    
T  24991998 cgttgacacctggtgtcaatggatcctatctcatatatatata 24991956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 25468538 - 25468496
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  25468538 cgttgacacctggtgtcaatggatcctgactcatatatatata 25468496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 27256736 - 27256778
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  27256736 cgttgacacctggtgtcaacggatcctgtctcatatatatata 27256778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 30663413 - 30663355
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc 387  Q
    |||| |||||||||||| || | |||| |||||||||||||||||||||||||| ||||    
T  30663413 acggttgagatttggtgtcaacgaatccgttgatacctggtgtcaacggatcctgactc 30663355  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 46391890 - 46391932
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  46391890 cgttgacacctggtgtcaacggatcctgtctcatatatatata 46391932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 10121554 - 10121607
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc 387  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||||||||    
T  10121554 tgagatttggtgtcaaccaatccgttgacacctggtgtcaacggatcctaactc 10121607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 13262883 - 13262830
Alignment:
Q  335 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 387  Q
    |||||||||||| || | ||| |||||| |||||||||||||||||||||||||    
T  13262883 tgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactc 13262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 28182096 - 28182137
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatat 397  Q
    |||||| ||||||||||||| |||||| ||||||||||||||    
T  28182096 cgttgacacctggtgtcaacagatcctcactcatatatatat 28182137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 34309227 - 34309296
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||| || | |||| ||||| ||||||||||||||||||||  |||| |||||||||    
T  34309227 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcacatatatata 34309296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Original strand, 46811728 - 46811793
Alignment:
Q  27 aatcgatatggtaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttct 92  Q
    |||||| |||| || |||||||||||||||| ||||| | ||| ||||||||| ||| ||||||||    
T  46811728 aatcgacatggaaaatctctatgagcaattttatggaaacgtgattttgaaattcgtcagtgttct 46811793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 169629 - 169693
Alignment:
Q  335 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| ||  |||| |||||| ||||||||||||||||||||| |||| | |||||||    
T  169629 tgagatttggtgtcaataaattcgttgacacctggtgtcaacggatcctacctcacacatatata 169693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 4439208 - 4439272
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| ||| ||||||||||||||||| || |||||||||||    
T  4439208 tgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctatcttatatatatata 4439272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 8987840 - 8987776
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| ||||| ||||||| |||||| |||||||||||||||    
T  8987840 tgagatttggtgtcaacgaatccgttgacacctgatgtcaaccgatcctgactcatatatatata 8987776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 17171960 - 17171916
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||    
T  17171960 tcgttgacacctggtgtcaacggatcctatctctatatatatata 17171916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 19172599 - 19172639
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatata 396  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  19172599 cgttgacacctggtgtcaatggatcctgactcatatatata 19172639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 26119428 - 26119460
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  26119428 tggtgtcaacggatcctgactcatatatatata 26119460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 31572480 - 31572512
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  31572480 tggtgtcaacggatcctgactcatatatatata 31572512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 406 - 476
Target Start/End: Original strand, 3910729 - 3910799
Alignment:
Q  406 acgattcaaaaaagaggtactaagacgtgacttatatctgtttctctcattatctcaccataaactaaccc 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3910729 acgattcaaaaaagaggtactaagacgtgacttatatctgtttctctcattatctcaccataaactaaccc 3910799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 1297090 - 1297188
Alignment:
Q  302 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  1297090 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 1297188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 9275671 - 9275577
Alignment:
Q  302 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatata 394  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||    
T  9275671 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatata 9275577  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 12725619 - 12725680
Alignment:
Q  338 gatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12725619 gatttggtgtcaacaaatccgttgacacctggtgtcaacggatcctaactcatatatatata 12725680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 11751091 - 11751134
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  11751091 tcgttgacacctggtgtcaacggatcctaactcatatatatata 11751134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 20432391 - 20432433
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  20432391 cgttgatacctggtgtcaacggatcttaactcatatatatata 20432433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 29559421 - 29559485
Alignment:
Q  335 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | ||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  29559421 tgagatttggtgtcaacgaattcgttgacacctggtgtcaacagatcctaactcatatatatata 29559485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 22301224 - 22301181
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  22301224 tcgttgacacctggtgtcaacggatcctgactcatatatatata 22301181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 27177942 - 27177899
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  27177942 tcgttgacacctggtgtcaacggatcctatctcatatatatata 27177899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 9276322 - 9276392
Alignment:
Q  326 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatat 395  Q
    ||||| || |||||||||||| || | ||| |||||| |||||||||||||||||||| ||||||||||||    
T  9276322 attgatggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcatatatat 9276392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 23857047 - 23857089
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  23857047 cgttgacaccaggtgtcaacggatcctaactcatatatatata 23857089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 29512422 - 29512358
Alignment:
Q  335 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || ||||| |||||| ||| |||||||||||||| | |||||||||||||||    
T  29512422 tgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcatgactcatatatatata 29512358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 29719497 - 29719433
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| ||||||||||||||||||||  ||||||||||||||    
T  29719497 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcatatatatata 29719433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 9540361 - 9540318
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||    
T  9540361 tcgttgacacctggtgtcaacggatcctgtctcatatatatata 9540318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 15902174 - 15902107
Alignment:
Q  332 ggatgagatttggtgccatca-aatcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||| ||  | || |||||| ||||||||||||||||||||  ||||||||||||||    
T  15902174 ggatgagatttggtgtcaatataaccgttgacacctggtgtcaacggatcctgtctcatatatatata 15902107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 1296439 - 1296365
Alignment:
Q  326 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||| || |||||||||||| || | ||| |||||| |||||||||||||||||||| |||| |||||||||||    
T  1296439 attgatggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactctatatatatata 1296365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 11750313 - 11750243
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    |||| |||||||||||| || | |||| ||||| |||||||||||| |||||||||||| |||||||||||    
T  11750313 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactctatatatatata 11750243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 18174666 - 18174728
Alignment:
Q  330 acggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatat 391  Q
    |||| |||||||||||| || | ||| |||||| ||||| |||||||||||||||||||||||    
T  18174666 acggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactcatat 18174728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 36238753 - 36238795
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||||| |||||| | ||||||||||||||    
T  36238753 cgttgatacctggtgtcaatggatcccatctcatatatatata 36238795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 15774262 - 15774190
Alignment:
Q  326 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| || |||||||||||| || ||||| |||||| ||| ||||||||||||||||| || |||||||||||    
T  15774262 attgatggttgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcctatct-atatatatata 15774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 24121314 - 24121355
Alignment:
Q  357 gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||| ||||||| |||||||||||||||    
T  24121314 gttgacacctggtgtcaatggatcctgactcatatatatata 24121355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 19428188 - 19428220
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||| |||||||||||||||||    
T  19428188 tggtgtcaacggatcataactcatatatatata 19428220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 26752057 - 26752021
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatat 391  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  26752057 tcgttgacacctggtgtcaacggatcctgactcatat 26752021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 396
Target Start/End: Complemental strand, 46428300 - 46428175
Alignment:
Q  272 gaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtg 370  Q
    ||||| ||||||| || |||||||||||  ||||||||||||||||||||||| || || || |||||||||||| || | ||| |||||| ||||||||    
T  46428300 gaaaacctcacgccagctcactacaccattaatatgtgcctttggattaaatatatagatggttgagatttggtgtcaacgaatccgttgacacctggtg 46428201  T
Q  371 tcaacggatcctaactcatatatata 396  Q
    |||||||||||| |||||||||||||    
T  46428200 tcaacggatcctgactcatatatata 46428175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 37950460 - 37950533
Alignment:
Q  326 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| ||||||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  37950460 attgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 37950533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 3772522 - 3772592
Alignment:
Q  329 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  3772522 gacggttgagatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctaactcatatatatata 3772592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 27948505 - 27948432
Alignment:
Q  326 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| || |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  27948505 attgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactcatatatatata 27948432  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 25343387 - 25343295
Alignment:
Q  302 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatata 392  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||    
T  25343387 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatata 25343295  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 398
Target Start/End: Complemental strand, 25342581 - 25342482
Alignment:
Q  302 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  25342581 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatata 25342482  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 16664149 - 16664191
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  16664149 cgttgacacctggtgtcaacggatcctaactcatatatatata 16664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 17638509 - 17638551
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  17638509 cgttgacacctggtgtcaacggatcctaactcatatatatata 17638551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 23902662 - 23902732
Alignment:
Q  272 gaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagattt 342  Q
    ||||| |||| || |||||| |||||||||||| ||||||||| |||||||||||| ||||| ||||||||    
T  23902662 gaaaaactcaagctagttcaatacaccaacaatctgtgccttttgattaaatagatagacggttgagattt 23902732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 30660652 - 30660578
Alignment:
Q  326 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||| ||||||||||||||| || | |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  30660652 attgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatata 30660578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 37395523 - 37395565
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  37395523 cgttgacacctggtgtcaacggatcctaactcatatatatata 37395565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 45099917 - 45099959
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  45099917 cgttgacacctggtgtcaacggatcctgactcatatatatata 45099959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 30661452 - 30661521
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||| || | |||| ||||| ||||||||||||||||||||  ||||||||||||||    
T  30661452 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgtctcatatatatata 30661521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 33781622 - 33781585
Alignment:
Q  361 atacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  33781622 atacctgatgtcaacggatcctaactcatatatatata 33781585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 23902331 - 23902395
Alignment:
Q  28 atcgatatggtaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttct 92  Q
    |||||||||| || |||||||||||||||| ||||| | ||| ||||||||| ||| ||||||||    
T  23902331 atcgatatggaaaatctctatgagcaattttatggaaacgtgattttgaaattcgtcagtgttct 23902395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 45162019 - 45161955
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||| | |||||||||||| |||||||||||||||||||||||    
T  45162019 tgagatttggtgtcaacgaatccgttaacacctggtgtcaatggatcctaactcatatatatata 45161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 3688437 - 3688370
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||| || | |||| ||||||| ||||||||||||||||||  ||||||||||||||    
T  3688437 ggataagatttggtgtcaacgaatccgttgatatctggtgtcaacggatcctgtctcatatatatata 3688370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 38225329 - 38225286
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| |||||||||||||||||| | |||||||||||||||    
T  38225329 tcgttgacacctggtgtcaacggatcatgactcatatatatata 38225286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 47171437 - 47171472
Alignment:
Q  363 acctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||||| |||||||||||||||    
T  47171437 acctggtgtcaacggatcctgactcatatatatata 47171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 3903363 - 3903405
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| ||| |||||||||||    
T  3903363 cgttgacacctggtgtcaacggatcctgacttatatatatata 3903405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 13785617 - 13785659
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  13785617 cgttgacacctggtgtcaacggatcctgtctcatatatatata 13785659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 14305118 - 14305076
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||| |||||||||||||||| ||||||||||||||    
T  14305118 cgttgacacctagtgtcaacggatcctatctcatatatatata 14305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 19068419 - 19068461
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  19068419 cgttgacacctggtgtcaacggatcctgtctcatatatatata 19068461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 24453730 - 24453792
Alignment:
Q  337 agatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||| || |||||| ||||| |||||||||||||| |||| | ||||||||||||||    
T  24453730 agatttggtgtcaacaaatccgttgacacctggtgtcaacgaatcccatctcatatatatata 24453792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 18977746 - 18977834
Alignment:
Q  310 cctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||| | ||||| || ||||||||||||  | | ||| |||||| |||||||||||| ||||||| ||| |||||||||||    
T  18977746 cctttggattaaaaaaattgatggttgagatttggtgttaacgaatccgttgacacctggtgtcaatggatcctgact-atatatatata 18977834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 37706502 - 37706413
Alignment:
Q  311 ctttggattaaatagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    |||||||||||| | ||||| || ||| ||||||||  | | |||| |||||||||||||||||| ||||||| |||| |||||||||||    
T  37706502 ctttggattaaaaaaattgatggttgaaatttggtgttaacgaatccgttgatacctggtgtcaatggatcctgactctatatatatata 37706413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 387
Target Start/End: Complemental strand, 40273630 - 40273557
Alignment:
Q  316 gattaaatagattga-cggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 387  Q
    |||||| |||||||| ||| |||||||||||| || | ||| | |||| |||||||||||||||||||||||||    
T  40273630 gattaattagattgaacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctaactc 40273557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 7668532 - 7668469
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||| ||| |||||||||||    
T  7668532 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgact-atatatatata 7668469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 9749934 - 9749902
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  9749934 tggtgtcaacggatcctgactcatatatatata 9749902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 383
Target Start/End: Complemental strand, 14686184 - 14686132
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatccta 383  Q
    ||||||||||||||| || |||||| ||||| || ||||||||||||||||||    
T  14686184 ggatgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatccta 14686132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 15305328 - 15305296
Alignment:
Q  363 acctggtgtcaacggatcctaactcatatatat 395  Q
    ||||||||||||||||| |||||||||||||||    
T  15305328 acctggtgtcaacggattctaactcatatatat 15305296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 46428840 - 46428884
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||    
T  46428840 tcgttgacacctggtgtcaacggatcctgactctatatatatata 46428884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 47785738 - 47785854
Alignment:
Q  272 gaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtg 370  Q
    ||||| ||||||| || |||||||||||  ||||||||||||||||||||||| || || || |||||||||||| || | ||| |||||| ||||||||    
T  47785738 gaaaacctcacgccagctcactacaccattaatatgtgcctttggattaaatatatagatggttgagatttggtgtcaacgaatccgttgacacctggtg 47785837  T
Q  371 tcaacggatcctaactc 387  Q
    ||||| |||||| ||||    
T  47785838 tcaacagatcctgactc 47785854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 26147025 - 26147098
Alignment:
Q  326 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| || |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26147025 attgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactcatatatatata 26147098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 2446160 - 2446226
Alignment:
Q  332 ggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatat 397  Q
    |||||||||||||||  | | |||| ||||| |||||||||||||||||||||||||||||||||||    
T  2446160 ggatgagatttggtgttaacgaatctgttgacacctggtgtcaacggatcctaactcatatatatat 2446226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 31329741 - 31329783
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  31329741 cgttgacacctggtgtcaacggatcctgactcatatatatata 31329783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 47688476 - 47688546
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    |||| |||||||||||| || | |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  47688476 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactctatatatatata 47688546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 53773610 - 53773652
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  53773610 cgttgacacctgatgtcaacggatcctaactcatatatatata 53773652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 7841600 - 7841531
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| || | |||| ||| | ||||| |||||||||||||| |||||||||||||||    
T  7841600 acggatgagatttggtgtcaacgaatccgttaacacctgatgtcaacggatcctgactcatatatatata 7841531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 12920271 - 12920340
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||| || | |||| ||| ||||||||||||||| ||||||| ||||||||||||||    
T  12920271 acggttgagatttggtgtcaacgaatctgttaatacctggtgtcaaccgatcctatctcatatatatata 12920340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 20774177 - 20774246
Alignment:
Q  330 acggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||| || | |||| ||||| |||||||||||| ||||||| |||||||||||||||    
T  20774177 acggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactcatatatatata 20774246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 40495123 - 40495082
Alignment:
Q  357 gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  40495123 gttgacacctggtgtcaacggatcctgactcatatatatata 40495082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 47687931 - 47687898
Alignment:
Q  363 acctggtgtcaacggatcctaactcatatatata 396  Q
    ||||||||||||||||||||||||||||||||||    
T  47687931 acctggtgtcaacggatcctaactcatatatata 47687898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 46169014 - 46169046
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||||||||||||||||||    
T  46169014 tggtgtcaacggatcctaactcatatatatata 46169046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 142547 - 142590
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||||    
T  142547 tcgttgacacccggtgtcaacggatcctatctcatatatatata 142590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 52871356 - 52871285
Alignment:
Q  328 tgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||| ||||||||| || | |||| ||||| |||||||||||||||||| |||||||| ||| ||||    
T  52871356 tgacggatgtgatttggtgtcaacgaatccgttgacacctggtgtcaacggatcttaactcatttatctata 52871285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 53772836 - 53772793
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    |||||| ||||||||||||||||||||||||| |||||||||||    
T  53772836 cgttgacacctggtgtcaacggatcctaactctatatatatata 53772793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 5046455 - 5046533
Alignment:
Q  306 tgtgcctttggattaaatagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatccta 383  Q
    |||||| || |||||| || || || |||| |||||||||| || | |||| |||||||||||||||||||||||||||    
T  5046455 tgtgccattagattaattaaatagatggattagatttggtgtcaacgaatctgttgatacctggtgtcaacggatccta 5046533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 8248544 - 8248586
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  8248544 cgttgacatctggtgtcaacggatcctgactcatatatatata 8248586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 8266209 - 8266251
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  8266209 cgttgacatctggtgtcaacggatcctgactcatatatatata 8266251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 12368679 - 12368721
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  12368679 cgttgacacctagtgtcaacggatcctgactcatatatatata 12368721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 16903630 - 16903692
Alignment:
Q  320 aaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcc 381  Q
    |||||||||||||| |||||||||||| || | ||| |||||| |||||||||||||| ||||    
T  16903630 aaatagattgacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcc 16903692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 16903692 - 16903734
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||| ||||| |||||||||||||||    
T  16903692 cgttgacacctggtgtcaacgaatcctgactcatatatatata 16903734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 398
Target Start/End: Original strand, 43147273 - 43147303
Alignment:
Q  368 gtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||||||||||||||||    
T  43147273 gtgtcaacggatcctaactcatatatatata 43147303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 53732464 - 53732422
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  53732464 cgttgacacctggtgtcaacggatcctgtctcatatatatata 53732422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 11938771 - 11938698
Alignment:
Q  326 attgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| || |||||||||||| || | ||| |||||| ||||||||| ||| ||||||||| ||||||||||||    
T  11938771 attgaaggttgagatttggtgtcaacgaattcgttgacacctggtgtgaacagatcctaacacatatatatata 11938698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 32089591 - 32089668
Alignment:
Q  311 ctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 387  Q
    |||||||||||| | || |||||||| ||||||||  || | ||| |||||| | |||||||||||||||||||||||    
T  32089591 ctttggattaaaaaaatagacggatgtgatttggtatcaacgaattcgttgacatctggtgtcaacggatcctaactc 32089668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 56262554 - 56262481
Alignment:
Q  310 cctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcct 382  Q
    ||||||||||||| | || ||||| |||||||||||| || | ||| | |||| ||||||||||||||||||||    
T  56262554 cctttggattaaaaatatagacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcct 56262481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 1466027 - 1466059
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  1466027 tggtgtcaacggatcctgactcatatatatata 1466059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 3654052 - 3654020
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||| ||||||||||||||    
T  3654052 tggtgtcaacggatcctatctcatatatatata 3654020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 5591057 - 5591097
Alignment:
Q  358 ttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  5591057 ttgacacctggtgtcaacggatcttgactcatatatatata 5591097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 24008412 - 24008380
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  24008412 tggtgtcaacggatcctgactcatatatatata 24008380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 44470160 - 44470192
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  44470160 tggtgtcaacggatcctgactcatatatatata 44470192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 48127313 - 48127273
Alignment:
Q  358 ttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  48127313 ttgacacctggtgtcaacggatcttgactcatatatatata 48127273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 346
Target Start/End: Complemental strand, 29854159 - 29853983
Alignment:
Q  178 gtgtaattgaaatcgatgaacaggacatacatgcttccactgtttgct--------tcctttgttcctcataacacattcagcggcaaaacattgcatga 269  Q
    |||||||||||||| ||| ||| |||| |||||||||||| |||||||        ||| ||||| ||||||||||| ||| ||||| ||| ||   |      
T  29854159 gtgtaattgaaatccatggacatgacacacatgcttccaccgtttgctactttgtttcccttgtttctcataacacactcaacggcagaacgttaggtag 29854060  T
Q  270 aagaaaagctcacgcgagttcactacaccaacaatatgtgcctttggattaaatagattgacggatgagatttggtg 346  Q
    | ||||| ||||||| ||||||||||||||| ||| |||||||||  ||||||||||| ||||| ||||||||||||    
T  29854059 aggaaaaactcacgctagttcactacaccaataatttgtgccttttaattaaatagatagacggttgagatttggtg 29853983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 13477087 - 13477044
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  13477087 tcgttgacacctggtgtcaacggatcctgactcatatatatata 13477044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 48648232 - 48648190
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  48648232 cgttgacacctggtgtcaacggatcctgactcatatatatata 48648190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 6775296 - 6775255
Alignment:
Q  357 gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  6775296 gttgatatttggtgtcaacggatcctaactcatatatatata 6775255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 14871206 - 14871141
Alignment:
Q  333 gatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatat 397  Q
    |||||||||||||| || | ||| |||||| |||||||||||||||||||| |||| |||||||||    
T  14871206 gatgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcttatatatat 14871141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 29854430 - 29854365
Alignment:
Q  27 aatcgatatggtaattctctatgagcaatttcatggataagtgtttttgaaatccgttagtgttct 92  Q
    ||||||||||| || |||||||||||||||| ||||| | ||| ||||||||| ||| ||||||||    
T  29854430 aatcgatatggaaaatctctatgagcaattttatggaaacgtgattttgaaattcgtcagtgttct 29854365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 37988195 - 37988284
Alignment:
Q  310 cctttggattaaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| ||||||| | ||| | || |||||||||||| || | ||| |||||| |||||||||||| ||||||| |||||||||||||||    
T  37988195 cctttagattaaaaatattaatggctgagatttggtgtcaacgaattcgttgacacctggtgtcaatggatcctgactcatatatatata 37988284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 20213010 - 20212967
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||| || |||||||||||||||    
T  20213010 tcgttgacacctggtgtcaacggattctgactcatatatatata 20212967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 54458640 - 54458731
Alignment:
Q  309 gcctttggattaa-atagattgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||| ||| || ||||||   ||||||||| || | |||| ||||| ||| |||||||||||||||||| |||||||||||||    
T  54458640 gcctttggattaacataaatggacggaaaggatttggtgtcaaccaatccgttgacaccaggtgtcaacggatcctaattcatatatatata 54458731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 8949965 - 8949923
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatat 397  Q
    ||||||| || ||||||||||||||||||||| ||||||||||    
T  8949965 tcgttgacacatggtgtcaacggatcctaacttatatatatat 8949923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 21726796 - 21726754
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  21726796 cgttgacacctggtgtcaacggatcctgtctcatatatatata 21726754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 21727553 - 21727595
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  21727553 cgttgacacctggtgtcaacggatcctgtctcatatatatata 21727595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 48764534 - 48764464
Alignment:
Q  329 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||| || | ||| |||||| ||||| |||||| ||||||| |||||||||||||||    
T  48764534 gacggttgagatttggtgtcaacgaattcgttgacacctgatgtcaatggatcctgactcatatatatata 48764464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 48507009 - 48507082
Alignment:
Q  310 cctttggattaaatagattgacggatgagatttggtgccatc-aaatcgttgatacctggtgtcaacggatcct 382  Q
    ||||||||||||| | || ||||| |||||||||||| || | || || |||| ||||||||||||||||||||    
T  48507009 cctttggattaaaaatatagacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcct 48507082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 52605506 - 52605543
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatata 392  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  52605506 tcgttgacacctggtgtcaacggatcctgactcatata 52605543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 264517 - 264454
Alignment:
Q  335 tgagatttggtgccatcaaatcg-ttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || ||||||  |||| |||||||||||| ||||||||||| |||||||||||    
T  264517 tgagatttggtgtcaacaaatccattgacacctggtgtcaatggatcctaact-atatatatata 264454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 23706765 - 23706868
Alignment:
Q  296 accaacaatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatat 393  Q
    ||||| ||| |||||| ||||||| |||| | |||| || |||||||||||| || | |||  ||||| ||||| ||||||||||| |||||||||||||    
T  23706765 accaaaaatctgtgccattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttgacacctg-tgtcaacggattctaactcatatat 23706863  T
Q  394 atata 398  Q
    |||||    
T  23706864 atata 23706868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 23725221 - 23725324
Alignment:
Q  296 accaacaatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatat 393  Q
    ||||| ||| |||||| ||||||| |||| | |||| || |||||||||||| || | |||  ||||| ||||| ||||||||||| |||||||||||||    
T  23725221 accaaaaatctgtgccattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttgacacctg-tgtcaacggattctaactcatatat 23725319  T
Q  394 atata 398  Q
    |||||    
T  23725320 atata 23725324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 23743677 - 23743780
Alignment:
Q  296 accaacaatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatat 393  Q
    ||||| ||| |||||| ||||||| |||| | |||| || |||||||||||| || | |||  ||||| ||||| ||||||||||| |||||||||||||    
T  23743677 accaaaaatctgtgccattggattgaataaaattgatggttgagatttggtgtcaacgaatatgttgacacctg-tgtcaacggattctaactcatatat 23743775  T
Q  394 atata 398  Q
    |||||    
T  23743776 atata 23743780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 31115601 - 31115665
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| |||| ||||||||||||||  |||||||||||||||    
T  31115601 tgagatttggtgtcaacgaatctgttgacacctagtgtcaacggatcccgactcatatatatata 31115665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 31974702 - 31974638
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| || |||||||||||||||||| || |||||||||||    
T  31974702 tgagatttggtgtcaacgaatccgttgacacttggtgtcaacggatcctatcttatatatatata 31974638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 43202830 - 43202858
Alignment:
Q  365 ctggtgtcaacggatcctaactcatatat 393  Q
    |||||||||||||||||||||||||||||    
T  43202830 ctggtgtcaacggatcctaactcatatat 43202858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 398
Target Start/End: Original strand, 38576269 - 38576367
Alignment:
Q  302 aatatgtgcctttggattaaataga-ttgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||| ||||||||| | |||| || |||||||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38576269 aatatgagccttttgattaaataaaattgatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcatatatatata 38576367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 8996966 - 8997039
Alignment:
Q  326 attgacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| || |||||||||||| || |||||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  8996966 attgatggttgagatttggtgtcaacaaatcagttgacacctggtatcaacggatcctgactcatatatatata 8997039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 41974691 - 41974627
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| |||||||||||||||||||| |||||||||||||||    
T  41974691 tgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcatatatatata 41974627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 27441496 - 27441453
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  27441496 tcgttgacacctggtgtcaacggatcctatctcatatatatata 27441453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 27442163 - 27442206
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  27442163 tcgttgacacctggtgtcaacggatcctgactcatatatatata 27442206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 31602090 - 31602014
Alignment:
Q  313 ttggattaaatagatt-gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc 387  Q
    |||||||||||| ||| ||||| |||||||||||| || | ||| |||||| ||||||||||||| |||||||||||    
T  31602090 ttggattaaataaattagacggttgagatttggtgtcaacgaattcgttgacacctggtgtcaaccgatcctaactc 31602014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 9197125 - 9197082
Alignment:
Q  355 tcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||| ||||||||||||||||| || |||||||||||||||    
T  9197125 tcgttgacacctggtgtcaacggattctgactcatatatatata 9197082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 3165145 - 3165187
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||| |||||||||||||| |||||||||||||||    
T  3165145 cgttgacacctgatgtcaacggatcctgactcatatatatata 3165187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 3291557 - 3291599
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  3291557 cgttgacatctggtgtcaacagatcctaactcatatatatata 3291599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 31642082 - 31642152
Alignment:
Q  329 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||| || | ||| |||||| | |||||||||| ||||||| |||||||||||||||    
T  31642082 gacggttgagatttggtgtcaacgaattcgttgacatctggtgtcaatggatcctgactcatatatatata 31642152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 39860138 - 39860097
Alignment:
Q  357 gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| ||||||||||||||||||||  ||||||||||||||    
T  39860138 gttgacacctggtgtcaacggatcctgcctcatatatatata 39860097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 14825672 - 14825636
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatata 392  Q
    |||||| |||| |||||||||||||||||||||||||    
T  14825672 cgttgacacctagtgtcaacggatcctaactcatata 14825636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 14826195 - 14826227
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||| ||||||||||||||    
T  14826195 tggtgtcaacggatcctatctcatatatatata 14826227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 28930864 - 28930896
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  28930864 tggtgtcaacggatcctgactcatatatatata 28930896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 32979091 - 32979059
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  32979091 tggtgtcaacggatcctgactcatatatatata 32979059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 37064891 - 37064804
Alignment:
Q  311 ctttggattaaatagattgacggatgagatttggtgcca-tcaaatcgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| ||||||| | |||||||| || ||||||||| || | || ||||||| ||||||||||||| |||||| ||| |||||||||||    
T  37064891 cttttgattaaaaaaattgacggttgtgatttggtgtcaatgaattcgttgacacctggtgtcaacagatcctgact-atatatatata 37064804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 26528879 - 26528809
Alignment:
Q  329 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||| || | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26528879 gacggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactcatatatatata 26528809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 10171332 - 10171262
Alignment:
Q  329 gacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||| || | |||| ||||| |||||||||||||||||||| |||||||||||||||    
T  10171332 gacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcatatatatata 10171262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 25060843 - 25060802
Alignment:
Q  357 gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  25060843 gttgacacctggtgtcaacggatcctaactcatatatatata 25060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 19311051 - 19310987
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || |||||| ||| | |||||||||||||||||||| |||||||||||||||    
T  19311051 tgagatttggtgtcaacaaatccgttaacacctggtgtcaacggatcctgactcatatatatata 19310987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 10171961 - 10172032
Alignment:
Q  329 gacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||| |||||||||||| || | ||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  10171961 gacggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactctatatatatata 10172032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 12344950 - 12344880
Alignment:
Q  329 gacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||  || | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  12344950 gacggttgagatttggtatcaacgaatctgttgacacctggtgtcaatggatcctaactcatatatatata 12344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 19323768 - 19323832
Alignment:
Q  335 tgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | ||| |||||| ||||||||||||||||||||  ||||||||||||||    
T  19323768 tgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgtctcatatatatata 19323832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 21133260 - 21133292
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||||||||||||||||||    
T  21133260 tggtgtcaacggatcctaactcatatatatata 21133292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 25061583 - 25061615
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||||||||||||||||||    
T  25061583 tggtgtcaacggatcctaactcatatatatata 25061615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 26529508 - 26529579
Alignment:
Q  329 gacggatgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    ||||| |||||||||||| || | |||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  26529508 gacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactctatatatatata 26529579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 398
Target Start/End: Complemental strand, 33435357 - 33435326
Alignment:
Q  367 ggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||||||||||||||||||    
T  33435357 ggtgtcaacggatcctaactcatatatatata 33435326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 18227751 - 18227718
Alignment:
Q  365 ctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||||||||| |||||||||||||||    
T  18227751 ctggtgtcaacggatcctgactcatatatatata 18227718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 4940258 - 4940290
Alignment:
Q  366 tggtgtcaacggatcctaactcatatatatata 398  Q
    ||||||||||||||||| |||||||||||||||    
T  4940258 tggtgtcaacggatcctgactcatatatatata 4940290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 5385 - 5445
Alignment:
Q  339 atttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||| || |||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  5385 atttggtgtcaacaaatccgttgacacctggtgtcaacggatcctgactcatatatatata 5445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 428888 - 428968
Alignment:
Q  320 aaatagattgacggatgagatttggtgccatcaaat-cgttgatacctggtgtcaacggatcctaactc-atatatatata 398  Q
    |||||||||| ||| |||||||||||| || | ||| |||||||||| |||||||||||||||| |||| |||||||||||    
T  428888 aaatagattggcggttgagatttggtgtcaacgaattcgttgataccgggtgtcaacggatcctgactctatatatatata 428968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 26620 - 26578
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  26620 cgttgacacctggtgtcaacggatcctgactcatatatatata 26578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 27552 - 27592
Alignment:
Q  358 ttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  27552 ttgacacctggtgtcaacggatcctgtctcatatatatata 27592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 8315 - 8357
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| |||||||||||| |||||||||||||||||||||||    
T  8315 cgttgacacctggtgtcaatggatcctaactcatatatatata 8357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 6909 - 6950
Alignment:
Q  357 gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  6909 gttgacacctggtgtcaacggatcctgactcatatatatata 6950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 801 - 737
Alignment:
Q  335 tgagatttggtgccatcaaatc-gttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||||||||| || | |||| ||||| |||||||||||| ||||||| |||||||||||||||    
T  801 tgagatttggtgtcaacgaatccgttgaaacctggtgtcaatggatcctgactcatatatatata 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 39924 - 39882
Alignment:
Q  356 cgttgatacctggtgtcaacggatcctaactcatatatatata 398  Q
    |||||| ||||||||||||||||| || |||||||||||||||    
T  39924 cgttgacacctggtgtcaacggattctgactcatatatatata 39882  T

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