View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538-Insertion-8 (Length: 471)

Name: NF4538-Insertion-8
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538-Insertion-8
NF4538-Insertion-8
[»] chr5 (2 HSPs)
chr5 (7-471)||(35272825-35273291)
chr5 (168-218)||(25443816-25443866)


Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 471
Target Start/End: Complemental strand, 35273291 - 35272825
Alignment:
Q  7 acctcaggctcctgaggttcgtgaacactgtcattggtgatgggagttaggatcagttttgcaaagacttcgtcagtttgaagattagctaagagatcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  35273291 acctcaggctcctgaggttcgtgaacactgtcattggtgatgggagttaggatcagttttgcaaagacttcatcagtttgaagatcagctaagagatcaa 35273192  T
Q  107 cgttggagacgacgcacggaatgatgggacggtaactattgataagggagagtgcttcagtgttaggggaagggcaggcatgttccaagtgacctagtgg 206  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35273191 cgtcggagacgacgcacggaatgatgggacggtaactattgataagggagagtgcttcagtgttaggggaagggcaggcatgttccaagtgacctagtgg 35273092  T
Q  207 aaagtaaaaaacatgagaatttagtttcggaattttgaacgatggtccggccaagcactgccagatttctcgatcaacacgtttgggttcctgaggatcc 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35273091 aaagtaaaaaacttgagaatttagtttcggaattttgaacgatggtccggccaagcactgccagatttctcgatcaacgcgtttgggttcctgaggatcc 35272992  T
Q  307 at--gggaagcgataaagctattggaagagaagaaaagatttgttatgaagagagcgccagaaaatatgattagggtttttaaaacaagtataaataagc 404  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35272991 atgggggaagcgataaagctattggaagagaagaaaagatttgttatgaagagagcgccagaaaatatgattagggtttttcaaacaagtataaataagc 35272892  T
Q  405 gatttaatatcggtgaaaagtttgttttttgaaagaaagatcggtgcaaaatttgttattatcttta 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35272891 gatttaatatcggtgaaaagtttgttttttgaaagaaagatcggtgcaaaatttgttattatcttta 35272825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 25443816 - 25443866
Alignment:
Q  168 gttaggggaagggcaggcatgttccaagtgacctagtggaaagtaaaaaac 218  Q
    |||||||||||||||||||||||||||||||||  |||| |||||| ||||    
T  25443816 gttaggggaagggcaggcatgttccaagtgaccatgtgggaagtaataaac 25443866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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