View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538-Insertion-9 (Length: 431)
Name: NF4538-Insertion-9
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 43830142 - 43829731
Alignment:
| Q |
7 |
acttatttgccattttaatagctcattcccatatgtgtttgtgattgtagttgggatttgctgtatgggaaccacctcatggtaaatacaaaatgcttaa |
106 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43830142 |
acttatttgccattttaatagctcattcccat--gtgtttgtgattgtagttgggatttgctgtatgggaaccacctcatggtaaatacaaaatgcttaa |
43830045 |
T |
|
| Q |
107 |
atatccatggaagaattatgtcaaagtaagtgaggctcttaggtattgcgcgtttatggttatggccatgcatggatgcatactttctgaaattcaggta |
206 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43830044 |
atatccatggaagaattatgtcaaagtaagcgaggctcttaggtattgcgcgtttgtggttatggccatgcatggatgcatactttctgaaattcaggta |
43829945 |
T |
|
| Q |
207 |
cttcaaaccttttatgtaacacttttttggttcttagtgtatagcatatcaaacttacttataaaatccatagccaaatgtcatttcaaaagtagactat |
306 |
Q |
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| T |
43829944 |
cttcaaaccttttatgtaacacttttttggttcttagtgtatagcatatcaaacttacttataaaatccatagccaaatgtcatttcaaaagtagactac |
43829845 |
T |
|
| Q |
307 |
ataaagttaaaatgaaacataaaaatatacttagaaagtaaaccagactatttgttttccttactagtagtttagtaagttcagttctcttttatatttt |
406 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
43829844 |
ataaagttaaaatgaaacataaaaatatagttagaaagtaaaccagaatatttgttttccttactagtagtttactaagttcagttctcttttatgtttt |
43829745 |
T |
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| Q |
407 |
ataaagtgtcttaa |
420 |
Q |
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| T |
43829744 |
ataaagtgtcttaa |
43829731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 43822530 - 43822359
Alignment:
| Q |
39 |
atgtgtttgtgattgtagttgggatttgctgtatgggaaccacctcatggtaaatacaaaatgcttaaatatccatggaagaattatgtcaaagtaagtg |
138 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43822530 |
atgtttttgtgattgtagttgggatttgctgtatgggaaccacctcatggtaaatacaaaatgcttaactatccatggaagaattatgtcaaagtaagtg |
43822431 |
T |
|
| Q |
139 |
aggctcttaggtattgcgcgtttatggttatggccatgcatggatgcatactttctgaaattcaggtacttc |
210 |
Q |
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| T |
43822430 |
gggctctaagacattgtgcattcatggtcatggccatgcatggatgcatactttctgaaattcaggtacttc |
43822359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 43815328 - 43815160
Alignment:
| Q |
41 |
gtgtttgtgattgtagttgggatttgctgtatgggaaccacctcatggtaaatacaaaatgcttaaatatccatggaagaattatgtcaaagtaagtgag |
140 |
Q |
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||||| ||||||| |||||||||||||||| |||||||||||||||||| | |||| || |||||||||||||||||||||||||| |||||||||| | |
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| T |
43815328 |
gtgttggtgattgaagttgggatttgctgtctgggaaccacctcatggtcactacagaagtcttaaatatccatggaagaattatgtgaaagtaagtggg |
43815229 |
T |
|
| Q |
141 |
gctcttaggtattgcgcgtttatggttatggccatgcatggatgcatactttctgaaattcaggtactt |
209 |
Q |
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| T |
43815228 |
gctctaagacattgcgcatttatggtcatggccatgcatggatgcatactttctgaaatacaggtactt |
43815160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 31808355 - 31808501
Alignment:
| Q |
63 |
tttgctgtatgggaaccacctcatggtaaatacaaaatgcttaaatatccatggaagaattatgtcaaagtaagtgaggctcttaggtattgcgcgttta |
162 |
Q |
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|||||| | ||||| |||||||||||| ||||||||| ||| |||||||||||| |||||||| |||||||||| || || ||| |||| || |||| |
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| T |
31808355 |
tttgctatttgggagccacctcatggtcgttacaaaatgtttagatatccatggaaaaattatgttaaagtaagtggagcactcaggcattgtgcattta |
31808454 |
T |
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| Q |
163 |
tggttatggccatgcatggatgcatactttctgaaattcaggtactt |
209 |
Q |
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|||| ||||| ||||||||||| |||||||||||||| ||||||||| |
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| T |
31808455 |
tggtgatggctatgcatggatgtatactttctgaaatacaggtactt |
31808501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 50244626 - 50244672
Alignment:
| Q |
162 |
atggttatggccatgcatggatgcatactttctgaaattcaggtact |
208 |
Q |
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| T |
50244626 |
atggtcatggcaatgcatggatgcatactttcagaaatacaggtact |
50244672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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