View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_high_10 (Length: 309)
Name: NF4538_high_10
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_high_10 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 11796992 - 11797275
Alignment:
| Q |
5 |
tcaagtaaagaaagggttcaacactcttgcacaaccacctttataataagaaggacagatcaataagcaagttgaattgggtgacttttgtggctcaaga |
104 |
Q |
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| T |
11796992 |
tcaagtaaagaaagggttcaacactcttgcacaaccacccttataataag---gacagatcaataagcaagttgaattgtgtgacttttgtggctcaaga |
11797088 |
T |
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| Q |
105 |
agtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttggttcaatggaggaatacaatgaagttttggtagaagctcaattaac |
204 |
Q |
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| T |
11797089 |
agtaatgaatacataaacgcaaaaaaactcattttcattgaagaagaaaatttggttcaatggaggaatacaatgacgttttgttagaagctcaattaac |
11797188 |
T |
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| Q |
205 |
tgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcat |
291 |
Q |
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| T |
11797189 |
tgatcttgtagatggtgctgttgattatagagggcaacctgcaatcagatccaaatctggttattggcgatccgcttggtttatcat |
11797275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 84 - 291
Target Start/End: Original strand, 11778498 - 11778704
Alignment:
| Q |
84 |
ggtgacttttgtggctcaagaagtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttggttcaatggaggaatacaatgaagt |
183 |
Q |
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| T |
11778498 |
ggtgacttttatggaccaagaagtaatgaatacataaacgcaaacaa-ctcattttgattgaagaagaaaatttggttcgatggaagaatacaatgatgt |
11778596 |
T |
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| Q |
184 |
tttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctggttattggcgatccgcttgg |
283 |
Q |
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| T |
11778597 |
tttgttagatgctaaattagctgatcttgtagatggtgctgttgattatagaggacaacctgccatcagatccaaatctggttattggctatccgcttgg |
11778696 |
T |
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| Q |
284 |
tttatcat |
291 |
Q |
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| T |
11778697 |
tttatcat |
11778704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 11701497 - 11701621
Alignment:
| Q |
164 |
atggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctg |
263 |
Q |
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| T |
11701497 |
atggaagaatccaatgaagtgttgttagaagctcaattatct---cttgttgatggcgctgttgactacaatggacagcctgcagttaggtttaaatctg |
11701593 |
T |
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| Q |
264 |
gttattggcgatccgcttggtttatcat |
291 |
Q |
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| T |
11701594 |
gttattggagatccgcttggtttatcat |
11701621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 11695776 - 11695832
Alignment:
| Q |
235 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcat |
291 |
Q |
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| T |
11695776 |
aggacaacctgccgttagatccaaaactggctattggagatccgcttggtttatcat |
11695832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 11675245 - 11675287
Alignment:
| Q |
249 |
ttagatccaaatctggttattggcgatccgcttggtttatcat |
291 |
Q |
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| T |
11675245 |
ttaggtccaaaactggttattggagatccgcttggtttatcat |
11675287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 11683524 - 11683566
Alignment:
| Q |
249 |
ttagatccaaatctggttattggcgatccgcttggtttatcat |
291 |
Q |
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| T |
11683524 |
ttaggtccaaaactggttattggagatccgcttggtttatcat |
11683566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 15852 - 15908
Alignment:
| Q |
235 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcat |
291 |
Q |
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| T |
15852 |
aggacaacctgccgttaggtccaaatctggttactggagatccgcttggtttatcat |
15908 |
T |
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