View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_high_2 (Length: 461)
Name: NF4538_high_2
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 7830477 - 7830049
Alignment:
| Q |
19 |
ttaagatgatcttgttcttatttgcaagttaatttgtctaccctagattcgtccctgcactgcaacccctcttagctcggtatctagatccactactgaa |
118 |
Q |
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| T |
7830477 |
ttaagatgatcttgctcttatttgcaagttaatttgtctcccctagattcgtccctgcactgcaacccctcttagctcggtatctagatccactactgaa |
7830378 |
T |
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| Q |
119 |
tttgtttattgtgcgacaaatttgtttgaagacccaaattctaataataatttttaagggactaaatttttaagattaatcagtattttgaagtgtttaa |
218 |
Q |
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| T |
7830377 |
tctgtttattgtgcgacaaatttgtttgaagacccaaattctaataataatttttaagggcctaaatttttaagattaatcagtattttgaagtgtttaa |
7830278 |
T |
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| Q |
219 |
gacggacctacccacccagatatgtaagttaataaagtgcttacaaaagaagatatacgtctgtatttgttcttcttattatagaatcagaacaaatttc |
318 |
Q |
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| T |
7830277 |
gacggaccta----cccagatatgtaagttaataaagtgcttacaaaagaagatatacgtctgtatttgttcttcttattatagaatcagaacaaatttc |
7830182 |
T |
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| Q |
319 |
ttacaccaactagaatgcaataatagatatccttattaggcataatccagagtggaaagcttgatattgtaatgatactaagatatctctannnnnnnac |
418 |
Q |
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| T |
7830181 |
ttacaccaactagaatgcaataatagatatccttattagccataatcctgagtggaaagcttgatattctaatgatactaagatatctctatttttttac |
7830082 |
T |
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| Q |
419 |
aatcacctaaactcaaacacgtctcttctcatt |
451 |
Q |
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| T |
7830081 |
aatcacctaaactcaaacacgtctcttctcatt |
7830049 |
T |
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