View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538_high_3 (Length: 446)

Name: NF4538_high_3
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538_high_3
NF4538_high_3
[»] chr1 (6 HSPs)
chr1 (18-437)||(2416717-2417137)
chr1 (189-360)||(2789613-2789784)
chr1 (28-182)||(2789351-2789517)
chr1 (364-437)||(2404146-2404219)
chr1 (364-437)||(29833394-29833467)
chr1 (364-437)||(734897-734970)
[»] chr5 (5 HSPs)
chr5 (364-437)||(37207664-37207737)
chr5 (367-437)||(23164559-23164629)
chr5 (364-437)||(22600704-22600777)
chr5 (367-437)||(11850226-11850296)
chr5 (367-437)||(11852484-11852554)
[»] chr8 (3 HSPs)
chr8 (367-437)||(21268448-21268518)
chr8 (367-437)||(36379786-36379856)
chr8 (367-437)||(36377501-36377571)
[»] chr7 (3 HSPs)
chr7 (364-437)||(8414809-8414882)
chr7 (364-437)||(36464542-36464615)
chr7 (365-437)||(3051993-3052065)
[»] chr2 (2 HSPs)
chr2 (367-437)||(31486678-31486748)
chr2 (367-437)||(31488962-31489032)
[»] chr4 (1 HSPs)
chr4 (305-360)||(4244630-4244685)


Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 2417137 - 2416717
Alignment:
Q  18 catacaatgaacataaagaagtcagtgcagttgaagctctgtctgagattcaccgatatatttctccgtctcttgaccaggcaagtttaccgtttcagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2417137 catacaatgaacataaagaagtcagtgcagttgaagctctgtctgagattcaccgatatatttctccgtctcttgaccaggcaagtttaccgtttcagtc 2417038  T
Q  118 atgtttcatagggtatttggacactttttcgtaagtgtttatcatataagagcttatgtatacgtactttctgtcgtaagccctcaaataaagtatttca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2417037 atgtttcatagggtatttggacactttttcgtaagtgtttatcatataagagcttatgtatacgtactttctgtcgtaagccctcaaataaagtatttca 2416938  T
Q  218 aaccctcctattaacttgcaagctacaatatcatttaagttctattgaagagagtgagcaactaagagtgccttattgattgtttgttgatttgacagga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416937 aaccctcctattaacttgcaagctacaatatcatttaagttctattgaagagagtgagcaactaagagtgccttattgattgtttgttgatttgacagga 2416838  T
Q  318 agttgttgacaatctttccattgaactgccaaaggctgtttcagagtgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416837 agttgttgacaatctttccattgaactgccaaaggctgtttcagagtgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtct 2416738  T
Q  418 ctc-gaagactacagaataat 437  Q
    ||| |||||||||||||||||    
T  2416737 ctcagaagactacagaataat 2416717  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 189 - 360
Target Start/End: Original strand, 2789613 - 2789784
Alignment:
Q  189 tgtcgtaagccctcaaataaagtatttcaaaccctcctattaacttgcaagctacaatatcatttaagttctattgaagagagtgagcaactaagagtgc 288  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  2789613 tgtcataagccctcaaataaagtatttcaaaccctcctattaacttccaagctacaatatcatgtaagttctattgaagagagtgagcgaccaagagtgc 2789712  T
Q  289 cttattgattgtttgttgatttgacaggaagttgttgacaatctttccattgaactgccaaaggctgtttca 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2789713 cttattgattgtttgttgatttgacaggaagttgttgacaatctttccatggaactgccaaaggctgtttca 2789784  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 2789351 - 2789517
Alignment:
Q  28 acataaagaagtcagtgcagttgaagctctgtctgagattcaccgatatattt---ctccgtctcttgaccaggcaagtttaccgtttcag--------t 116  Q
    |||||||||| ||| |||| |||||||||||||||| ||||| ||||| ||||   || ||||||||||||||||||| |||| |||||||        |    
T  2789351 acataaagaaatcaatgcatttgaagctctgtctgaaattcatcgatacatttgttcttcgtctcttgaccaggcaagcttactgtttcagactttcagt 2789450  T
Q  117 catgtttcatagggtatttggacactttttc-gtaagtgtttatcatataagagcttatgtatacgt 182  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  2789451 catgtttcatagggtatttggacacttattcagtaagtgtttatcatataagagcttatgtatacgt 2789517  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 2404219 - 2404146
Alignment:
Q  364 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  2404219 tgatgaagaataaaatagaagactctaggatactagagaataatgtggaaatctctagaagactaaagaataat 2404146  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 29833467 - 29833394
Alignment:
Q  364 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    ||||||||||||| || ||||||||||| |||| |||||||||||||||||||||| ||| |||| ||||||||    
T  29833467 tgatgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataat 29833394  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 734970 - 734897
Alignment:
Q  364 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    ||||||||||||| || ||||||||||| |||| || ||||||||||||||||| | |||||||| ||||||||    
T  734970 tgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctttagaagactaaagaataat 734897  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 37207664 - 37207737
Alignment:
Q  364 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    ||||||||||||| || ||||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||    
T  37207664 tgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataat 37207737  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 437
Target Start/End: Complemental strand, 23164629 - 23164559
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||    
T  23164629 tgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataat 23164559  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 22600704 - 22600777
Alignment:
Q  364 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    ||||||||||||| || ||||||||||| |||  || ||||||||||||||||||| |||||||| | ||||||    
T  22600704 tgatgaagaataatatggaagactctagaatattagggaataatgtggaagtctctagaagactaaataataat 22600777  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 437
Target Start/End: Complemental strand, 11850296 - 11850226
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||| | |||| |  ||||||||||||||||||| |||||||| ||||||||    
T  11850296 tgaagaataatatggaagactcttgaatactatggaataatgtggaagtctctagaagactaaagaataat 11850226  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 437
Target Start/End: Complemental strand, 11852554 - 11852484
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||||| |||| |   ||||||| |||||||||| |||||||| ||||||||    
T  11852554 tgaagaataatatggaagactctagaatactatgaaataatgaggaagtctctagaagactaaagaataat 11852484  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 437
Target Start/End: Complemental strand, 21268518 - 21268448
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||||| |||| |||||||||||||||||||||| ||| |||| ||||||||    
T  21268518 tgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataat 21268448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 437
Target Start/End: Complemental strand, 36379856 - 36379786
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||    
T  36379856 tgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataat 36379786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 437
Target Start/End: Complemental strand, 36377571 - 36377501
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||||| |||| |  ||||||||||||||||||| |||||||| ||||||||    
T  36377571 tgaagaataatatggaagactctagaatactaaggaataatgtggaagtctctagaagactaaagaataat 36377501  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 8414882 - 8414809
Alignment:
Q  364 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    ||||||||||||| || ||||||||||| |||| |||||||||||||||||| ||| ||| |||| ||||||||    
T  8414882 tgatgaagaataatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataat 8414809  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 36464615 - 36464542
Alignment:
Q  364 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    ||||||| ||||| || ||||||||||| |||| |||||||||||||||||||||| ||| |||| | ||||||    
T  36464615 tgatgaaaaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaataataat 36464542  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 437
Target Start/End: Original strand, 3051993 - 3052065
Alignment:
Q  365 gatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||||| || ||||||||||| |||| |||||||||||| |||||||||  || |||| ||||||||    
T  3051993 gatgaagaataatatggaagactctagaatactagagaataatgtcgaagtctctataacactaaagaataat 3052065  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 31486678 - 31486748
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||||| |||| || |||||||||||||| |||| |||||||| ||||||||    
T  31486678 tgaagaataatatggaagactctagaatactagggaataatgtggaagcctctagaagactagagaataat 31486748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 31488962 - 31489032
Alignment:
Q  367 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 437  Q
    |||||||||| || ||||||||||| |||| || |||||||||||||||||||  ||||||| ||||||||    
T  31488962 tgaagaataatatggaagactctagaatactagggaataatgtggaagtctctaaaagactaaagaataat 31489032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 4244630 - 4244685
Alignment:
Q  305 tgatttgacaggaagttgttgacaatctttccattgaactgccaaaggctgtttca 360  Q
    ||||||||||||||||||||||   ||||||| ||||| |||||||||||||||||    
T  4244630 tgatttgacaggaagttgttgatgctctttcctttgaagtgccaaaggctgtttca 4244685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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