View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_high_7 (Length: 358)
Name: NF4538_high_7
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 43410868 - 43411247
Alignment:
| Q |
1 |
cacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagct |
100 |
Q |
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| T |
43410868 |
cacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagct |
43410967 |
T |
|
| Q |
101 |
----tacaacttct---catctgaatgtgttgtgtc------------tgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgt |
181 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410968 |
agcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgt |
43411067 |
T |
|
| Q |
182 |
tagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcatattgtttaattagagttt |
281 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
43411068 |
tagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcttgttgtttaattagagttt |
43411167 |
T |
|
| Q |
282 |
tagttaacaaagcatcataccaaa-----------catgtagtcttcgtgattacataaactattttgttcatctcactc |
350 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43411168 |
tagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtgattacataaactattttgttcatctcactc |
43411247 |
T |
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