View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4538_low_1 (Length: 686)
Name: NF4538_low_1
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 44136851 - 44137263
Alignment:
| Q |
1 |
ccgcaattggaaagtatgcagaaaaatctcgcttctctaattctacaagaggaaacttactggcgtcaacgttctaaggtctattggttagcagacggcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
44136851 |
ccgcaattggaaagtatgcagaaaaatctcgcttctttaattctacaagaggaaacttactggcatcaacgttctaaggtctattggttagtagacgg-- |
44136948 |
T |
|
| Q |
101 |
acactaatagcaagttcttccatgcctctgcttcggccaggaaaaggaaaaatactattaagcaactgcgtgactcttcaggtaattggatcacttcgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44136949 |
acactaatagcaagttcttccatgcctctgcttcggccaggaaaaggaaaaatactattacgcaactgcgtgactcttcaggtaattggatcacttcgca |
44137048 |
T |
|
| Q |
201 |
agaggatctttgcgcccttgttcgtgattacttcacctccatattctcttcacaacatggagattatcatagcatcatttcctcggtccactcaagggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137049 |
agaggatctttgcgcccttgttcgtgattacttcacctccatattctcttcacaacatggagattatcatagcatcatttcctcggtccactcaagggta |
44137148 |
T |
|
| Q |
301 |
acagatgacgacaataccttgctcacccgacctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccgaccctgatg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137149 |
acagatgacgacaataccttgctcacccggcctttctctgaaattgaattcaaggaaacaatttttagcatgcatccagataagtctcccgaccctgatg |
44137248 |
T |
|
| Q |
401 |
gacttaatccagctt |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44137249 |
gacttaatccagctt |
44137263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 475 - 671
Target Start/End: Original strand, 44137266 - 44137464
Alignment:
| Q |
475 |
cttgagcctagctctttgcccatagaacttaacgccacgaatattgttctagcgcccaagatagac--ccctgaaactatgaaggacctccgtccgatat |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
44137266 |
cttgagcctagctctttgcccatagaacttaacgccacgaatattgttctagcgcccaagatagacacccctgaaactatgaaggacctccgtcctatat |
44137365 |
T |
|
| Q |
573 |
ccttatgcaatgtgctatacaaagtaatctccaaggtactcgccaaccgcctccgtcctctcattaacaaatggatctcaccagaacagtctgcctttg |
671 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44137366 |
ccttatgcaatgtgctctacaaagtaatctccaaggtactcgccaaccgcctccgtcctctcattaacaaatggatctcaccagaacagtctgcctttg |
44137464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 27646348 - 27646231
Alignment:
| Q |
74 |
ctaaggtctattggttagcagacggcgacactaatagcaagttcttccatgcctctgcttcggccaggaaaaggaaaaatactattaagcaactgcgtga |
173 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||| ||||| || ||||| || || || || |||||||| |||||||| ||||| || | || ||||| |
|
|
| T |
27646348 |
ctaaggtttattggttagctgatggcgatactaacagcaaatttttccacgcatcagcatctgccaggaagaggaaaaacactataaaaaagcttcgtga |
27646249 |
T |
|
| Q |
174 |
ctcttcaggtaattggat |
191 |
Q |
| |
|
| | ||||| |||||||| |
|
|
| T |
27646248 |
cccatcaggcaattggat |
27646231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 546 - 611
Target Start/End: Original strand, 14646195 - 14646260
Alignment:
| Q |
546 |
aaactatgaaggacctccgtccgatatccttatgcaatgtgctatacaaagtaatctccaaggtac |
611 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
14646195 |
aaactatgaaggacctccgtccgatatctttatgtaatgtgctctacaaagtcatctccaaggtac |
14646260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 29015626 - 29015691
Alignment:
| Q |
358 |
acaatttttagcatgcatccagataagtctcccgaccctgatggacttaatccagctttctttcaa |
423 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||| ||| ||||| |||||||| | ||||| |||| |
|
|
| T |
29015626 |
acaattttcagcatgcacctagataagtctcccggccccgatggccttaatcctggtttctatcaa |
29015691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University