View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_low_11 (Length: 337)
Name: NF4538_low_11
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 70 - 317
Target Start/End: Original strand, 35130252 - 35130505
Alignment:
| Q |
70 |
gttatttttcaatgagtggttccattatatatggcaccttgttttgatgttgtgtgcactgcatgtggagggtggcagcaatgattgatattcataaaaa |
169 |
Q |
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| T |
35130252 |
gttatttttcaatgagtggttccattatatatggcaccttgttttgatgttgtgtgcactgcatgtggagggtgacagcaatgattgatattcataaaaa |
35130351 |
T |
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| Q |
170 |
tgcatagcatatagtatagtac------catatctttgaatatgttggaaaagtataacaatcatttagatgtcagcaaaaatagagaaaccaccaataa |
263 |
Q |
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| T |
35130352 |
tgcatagcatatagtatagtactcctaccatatctttgaatatgttggaaaagtataacaatcatttagatgtcagcaaaaatagagaaaccaccaataa |
35130451 |
T |
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| Q |
264 |
ttttatcatacattacaagtacttcaatattaatgttaatgaggtgtctagctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130452 |
ttttatcatacattacaagtacttcaatattaatgttaatgaggtgtctagctt |
35130505 |
T |
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