View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538_low_13 (Length: 304)

Name: NF4538_low_13
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538_low_13
NF4538_low_13
[»] chr7 (13 HSPs)
chr7 (11-231)||(43598833-43599059)
chr7 (151-231)||(43135315-43135395)
chr7 (11-82)||(12879274-12879345)
chr7 (14-78)||(43692561-43692625)
chr7 (39-106)||(41159361-41159428)
chr7 (11-78)||(44396395-44396462)
chr7 (15-78)||(49080789-49080851)
chr7 (21-78)||(48252905-48252962)
chr7 (11-71)||(36725798-36725858)
chr7 (11-77)||(36118058-36118124)
chr7 (15-77)||(40160353-40160415)
chr7 (15-71)||(8404777-8404833)
chr7 (11-71)||(46700860-46700920)
[»] chr4 (15 HSPs)
chr4 (11-106)||(46382024-46382119)
chr4 (27-103)||(55875995-55876071)
chr4 (11-78)||(41377389-41377456)
chr4 (11-77)||(38567974-38568040)
chr4 (5-98)||(43354968-43355060)
chr4 (39-78)||(43264478-43264517)
chr4 (11-78)||(55875849-55875916)
chr4 (4-77)||(34388825-34388898)
chr4 (21-78)||(52327026-52327083)
chr4 (23-71)||(9268362-9268410)
chr4 (15-99)||(37556241-37556325)
chr4 (11-78)||(5415200-5415267)
chr4 (23-106)||(17476229-17476312)
chr4 (26-71)||(2681129-2681174)
chr4 (23-104)||(27757742-27757823)
[»] chr2 (9 HSPs)
chr2 (11-103)||(40095798-40095890)
chr2 (11-75)||(8322179-8322243)
chr2 (11-78)||(4897248-4897315)
chr2 (11-78)||(4944642-4944709)
chr2 (15-78)||(9104594-9104657)
chr2 (5-78)||(14657513-14657586)
chr2 (21-78)||(32914476-32914533)
chr2 (40-103)||(29794379-29794442)
chr2 (23-70)||(6859023-6859070)
[»] chr3 (13 HSPs)
chr3 (4-103)||(28939672-28939771)
chr3 (15-100)||(49644375-49644460)
chr3 (4-75)||(11467227-11467298)
chr3 (22-78)||(35496131-35496187)
chr3 (4-100)||(40793174-40793270)
chr3 (23-78)||(1995600-1995655)
chr3 (11-77)||(45266880-45266947)
chr3 (23-78)||(35424156-35424211)
chr3 (11-78)||(49786966-49787033)
chr3 (11-77)||(14898467-14898533)
chr3 (5-51)||(55051786-55051832)
chr3 (23-104)||(20809616-20809697)
chr3 (11-68)||(29096142-29096199)
[»] chr6 (6 HSPs)
chr6 (4-79)||(10682508-10682583)
chr6 (11-78)||(2844143-2844210)
chr6 (15-77)||(34427089-34427151)
chr6 (40-100)||(31602141-31602201)
chr6 (11-78)||(19763564-19763631)
chr6 (29-78)||(30775374-30775423)
[»] chr8 (10 HSPs)
chr8 (4-68)||(5191347-5191411)
chr8 (15-103)||(27107771-27107858)
chr8 (11-79)||(35158895-35158963)
chr8 (11-78)||(11425510-11425577)
chr8 (23-71)||(9682379-9682427)
chr8 (22-78)||(37479211-37479267)
chr8 (29-70)||(1156298-1156339)
chr8 (26-71)||(17312874-17312919)
chr8 (15-72)||(40713778-40713835)
chr8 (11-71)||(27594274-27594334)
[»] scaffold0015 (1 HSPs)
scaffold0015 (23-78)||(56607-56662)
[»] chr1 (13 HSPs)
chr1 (15-106)||(27641515-27641605)
chr1 (15-78)||(43496421-43496484)
chr1 (11-78)||(47394395-47394462)
chr1 (15-75)||(16679936-16679996)
chr1 (11-71)||(26707131-26707191)
chr1 (23-70)||(1035776-1035823)
chr1 (15-75)||(19322831-19322891)
chr1 (23-71)||(46823651-46823699)
chr1 (23-78)||(7900179-7900234)
chr1 (11-78)||(10574370-10574437)
chr1 (23-77)||(50428497-50428551)
chr1 (15-60)||(19466340-19466385)
chr1 (23-71)||(51613285-51613333)
[»] chr5 (8 HSPs)
chr5 (4-70)||(4925098-4925164)
chr5 (11-77)||(14913485-14913551)
chr5 (23-76)||(34383718-34383771)
chr5 (11-98)||(14593868-14593955)
chr5 (15-78)||(34769580-34769643)
chr5 (22-76)||(37902402-37902457)
chr5 (4-78)||(39060220-39060294)
chr5 (23-71)||(9959336-9959384)
[»] scaffold0867 (1 HSPs)
scaffold0867 (48-100)||(3546-3598)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 43598833 - 43599059
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaattgcatg 110  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| | |    
T  43598833 atgaatatttgaaaaatatagttgagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccaccaaattggacg 43598932  T
Q  111 catgaatgtggatttt------acccaaaaaatgagagaggaaggaggccgaaattttgagttgccaaaatcaccattttcatcaaaaattccaaaatct 204  Q
    |||| ||||||||| |      ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43598933 catggatgtggattctctaagtacccaaaaaatgagagagggaggaggccgaaattttgagttgccaaaatcatcattttcatcaaaaattccaaaatct 43599032  T
Q  205 tcatttctccatgaaacttcaccattc 231  Q
    ||| |||||||||||||||||||||||    
T  43599033 tcaattctccatgaaacttcaccattc 43599059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 43135315 - 43135395
Alignment:
Q  151 ggccgaaattttgagttgccaaaatcaccattttcatcaaaaattccaaaatcttcatttctccatgaaacttcaccattc 231  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43135315 ggccgaaattttgagtggccaaaatcaccattttcatcaaaaattccaaaatcttcatttcttcatgaaacttcaccattc 43135395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 12879345 - 12879274
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaata 82  Q
    ||||||||||  ||||| |||||  || |||||||||||||||||||||||| |||||||| ||||||||||    
T  12879345 atgaatatttagaaaatatagttgtgttgtttaaataattgagaagtgtgaagtaatataaaatattaaata 12879274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 43692561 - 43692625
Alignment:
Q  14 aatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||| |||||| ||| | ||| |||||||||||||||||||||||| ||||||||| |||||    
T  43692561 aatatttaaaaaatttagatgagtggtttaaataattgagaagtgtgaaataatataatgtatta 43692625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 41159428 - 41159361
Alignment:
Q  39 gtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaattg 106  Q
    |||||||||||||  ||||||||| |||||||||||||| | | | ||| ||||||||||||||||||    
T  41159428 gtttaaataattggaaagtgtgaaataatataatatattgagtggcgtccatttataccaccaaattg 41159361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 44396395 - 44396462
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||  ||||||||||| ||| | ||||||||||| ||||||| || |||||||||||||||    
T  44396395 atgaatatttagaaaatgtagttgagtgggttaaataattgggaagtgtaaagtaatataatatatta 44396462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 49080851 - 49080789
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||| |||||||||||  ||| |||||||||||||| ||||||||| |||||||||||||||    
T  49080851 atatttaaaaaatgtagta-agtggtttaaataattgaaaagtgtgaagtaatataatatatta 49080789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 48252905 - 48252962
Alignment:
Q  21 gaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||||| ||| |||||||||||||  ||||||||| |||||||| ||||||    
T  48252905 gaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataaaatatta 48252962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 36725798 - 36725858
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||  ||| ||||||| ||| ||||||||||||||||||||| || ||||||||    
T  36725798 atgaatatttagaaattgtagttgagtggtttaaataattgagaagtgtaaaataatataa 36725858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 36118124 - 36118058
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    ||||||||||  |||||||| || ||| ||||||||||| ||||||||| || ||||||||| ||||    
T  36118124 atgaatatttagaaaatgtaattgagtggtttaaataatagagaagtgttaaataatataatgtatt 36118058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 40160353 - 40160415
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    |||||| |||| | ||||| ||| |||||||||||||||||| || || ||||||||||||||    
T  40160353 atatttaaaaattttagttgagttgtttaaataattgagaagcgttaagtaatataatatatt 40160415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 8404833 - 8404777
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    |||||| ||||||||| || ||| |||||||||||||  ||||||||| ||||||||    
T  8404833 atatttaaaaaatgtaattgagtggtttaaataattggaaagtgtgaaataatataa 8404777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 46700860 - 46700920
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||  ||||| || | |||| |||||||||||||||||||||||| || |||||    
T  46700860 atgaatatttagaaaatataatatagtggtttaaataattgagaagtgtgaaatagtataa 46700920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 46382024 - 46382119
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaattg 106  Q
    ||||||||||||||||| ||||  ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  46382024 atgaatatttgaaaaatatagtggagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccaccaaattg 46382119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 55876071 - 55875995
Alignment:
Q  27 tgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaa 103  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||    
T  55876071 tgtagttgaatagtttaaataattgagaagtgtgaagtaatataatatattaagtagggtccatttataccaccaaa 55875995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 41377389 - 41377456
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||| ||| |||||||||||||||    
T  41377389 atgaatatttaaaaaatgtagttgagtagttaaaataattgagaagtgggaagtaatataatatatta 41377456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 38567974 - 38568040
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    |||||||||| |||||||||||| ||| |||||||||||||| ||||  ||| ||||||||||||||    
T  38567974 atgaatatttaaaaaatgtagttgagtggtttaaataattgaaaagtaagaagtaatataatatatt 38568040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 43355060 - 43354968
Alignment:
Q  5 agtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttatacca 98  Q
    ||||| |||||||||| ||||||||| || ||| |||||||||||||| | |||| || |||||||||||||| | | ||||| ||||||||||    
T  43355060 agtgatatgaatatttaaaaaatgtaattgagtggtttaaataattga-aggtgtaaagtaatataatatattgagtggagtctatttatacca 43354968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 43264517 - 43264478
Alignment:
Q  39 gtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  43264517 gtttaaataattgagaagtgtgaagtaatataatatatta 43264478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 55875849 - 55875916
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||| |||||||||||| ||| |||||| |||||||||  |||||| ||||||||| |||||    
T  55875849 atgaatatttaaaaaatgtagttgagtggtttaagtaattgagagatgtgaagtaatataatttatta 55875916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 34388898 - 34388825
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    |||||| ||||||||||  ||||||| ||||||| |||||||||||||| || ||| || ||||||||| ||||    
T  34388898 gagtgatatgaatatttagaaaatgtggtttagtggtttaaataattgaaaaatgtaaaataatataatgtatt 34388825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 52327026 - 52327083
Alignment:
Q  21 gaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||||| |||  ||||||||||||| ||||||||| |||||||| ||||||    
T  52327026 gaaaaatgtagttgagtgatttaaataattgaaaagtgtgaagtaatataaaatatta 52327083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 9268410 - 9268362
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  9268410 aaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataa 9268362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 37556325 - 37556241
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccac 99  Q
    |||||| |||||| ||||| ||||||||||||||||||||| |||| | || ||||| | ||||||  | ||| |||||||||||    
T  37556325 atattttaaaaatatagttgagtagtttaaataattgagaaatgtgtaatattataaaaaattaaacggggtctatttataccac 37556241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 5415267 - 5415200
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||  ||||||||||| |||   ||||||||||| ||||||| || |||||||||||||||    
T  5415267 atgaatatttagaaaatgtagttgagtgagttaaataattgggaagtgtaaagtaatataatatatta 5415200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 17476229 - 17476312
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaattg 106  Q
    ||||||||||| ||| || ||||||||||  || ||||||  |||||||||||| || | | ||| ||||||||||||||||||    
T  17476229 aaaatgtagttgagttgtctaaataattggaaaatgtgaagaaatataatatatcaagtggggtccatttataccaccaaattg 17476312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 2681129 - 2681174
Alignment:
Q  26 atgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    |||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  2681129 atgtagttgagtggtttaaataattgaaaagtgtgaagtaatataa 2681174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 27757823 - 27757742
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaat 104  Q
    ||||||||||||||| | |||||||||||| |||| | || |||||||| |||||| ||  |||  |||||||||| |||||    
T  27757823 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattagatgaagtttatttataccatcaaat 27757742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 40095798 - 40095890
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaa 103  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| || | ||| |||||||||||||||    
T  40095798 atgaatatttaaaaaatgtagttgagtagtttaaataattgagaagtgtaaagtaatataatatattagatggggtccatttataccaccaaa 40095890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 8322179 - 8322243
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatata 75  Q
    |||||||||||||||||||| || ||| |||||||||||||| ||||||||| ||||||||||||    
T  8322179 atgaatatttgaaaaatgtaattgagtggtttaaataattgaaaagtgtgaagtaatataatata 8322243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 4897248 - 4897315
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||  ||||||||||| |||||||||||||||||| || |||||| |||| ||||||||||    
T  4897248 atgaatatttagaaaatgtagttgagtagtttaaataattgaaaaatgtgaagtaatgtaatatatta 4897315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 4944642 - 4944709
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||  ||||||||||| |||||||||||||||||| || |||||| |||| ||||||||||    
T  4944642 atgaatatttagaaaatgtagttgagtagtttaaataattgaaaaatgtgaagtaatgtaatatatta 4944709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 9104657 - 9104594
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||| |||||||||||| ||| ||||||||||||||||| |||||| |||||||| ||||||    
T  9104657 atatttaaaaaatgtagttgagtggtttaaataattgagaattgtgaaataatataaaatatta 9104594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 14657513 - 14657586
Alignment:
Q  5 agtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||| ||||||||||  ||||||||||| ||| |||||||||||||  ||||||||| ||||||||| |||||    
T  14657513 agtgatatgaatatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaaataatataatgtatta 14657586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 32914476 - 32914533
Alignment:
Q  21 gaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| |||||||| ||||||    
T  32914476 gaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaaatatta 32914533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 29794379 - 29794442
Alignment:
Q  40 tttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaa 103  Q
    |||||||||| || ||||||||| |||||||||||||||  | ||||| |||||||||||||||    
T  29794379 tttaaataatcgaaaagtgtgaaataatataatatattaggtggagtccatttataccaccaaa 29794442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 6859070 - 6859023
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatata 70  Q
    ||||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  6859070 aaaatatagtttagtggtttaaataattgggaagtgtgaagtaatata 6859023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 28939771 - 28939672
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaa 103  Q
    |||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||  | | ||| |||||||||||||||    
T  28939771 gagtgatatgaatatttagaaaatgtagttgagtagtttaaataattgagaagtgtgaagtaatataatatattaggtggggtctatttataccaccaaa 28939672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 49644375 - 49644460
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccacc 100  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| | | ||| ||||| ||||||    
T  49644375 atatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaagtggggtccatttaaaccacc 49644460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 11467298 - 11467227
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatata 75  Q
    |||||| ||| ||||||  ||||||||||| | | |||||||||||||||||||||||| ||||||||||||    
T  11467298 gagtgatatggatatttagaaaatgtagttgattggtttaaataattgagaagtgtgaagtaatataatata 11467227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 35496187 - 35496131
Alignment:
Q  22 aaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||||| | |  ||||||||||||||||||||||| |||||||||||||||    
T  35496187 aaaaatgtagttgaatgatttaaataattgagaagtgtgaagtaatataatatatta 35496131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 40793270 - 40793174
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccacc 100  Q
    |||||| ||||||||||  ||||||||||| ||| |||||||||||||| ||||| ||| ||||||||  |||||  | || || ||||||||||||    
T  40793270 gagtgatatgaatatttataaaatgtagttgagtggtttaaataattgaaaagtgagaagtaatataaagtattacgtggaatccatttataccacc 40793174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 1995655 - 1995600
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||||    
T  1995655 aaaatgtagttaagtggtttaaataattgggaagtgtgaagtaatataatgtatta 1995600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 45266880 - 45266947
Alignment:
Q  11 atgaatatttgaaaaatg-tagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    ||||||||||  |||||| ||||||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  45266880 atgaatatttagaaaatgctagtttagtggtttaaatgattgagaagtgtgaaataatataatgtatt 45266947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 35424211 - 35424156
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||| ||| |||||||||||||| || |||||| ||||||||| |||||    
T  35424211 aaaatgtagttgagtggtttaaataattgaaaaatgtgaagtaatataatgtatta 35424156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 49787033 - 49786966
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||  ||||| ||||| ||| |||||||||||||||| ||  ||| |||||||||||||||    
T  49787033 atgaatatttataaaatatagttgagtggtttaaataattgagatgtaagaaataatataatatatta 49786966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 14898467 - 14898533
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    ||||||||||  ||||||||||||||| ||||||| |||||| || ||| || ||||||||| ||||    
T  14898467 atgaatatttagaaaatgtagtttagtggtttaaacaattgaaaaatgtaaaataatataatgtatt 14898533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 55051786 - 55051832
Alignment:
Q  5 agtgagatgaatatttgaaaaatgtagtttagtagtttaaataattg 51  Q
    ||||| ||||||||||  |||||||||||||||| ||||||||||||    
T  55051786 agtgatatgaatatttagaaaatgtagtttagtaatttaaataattg 55051832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 20809697 - 20809616
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaat 104  Q
    ||||| ||||| ||| |||||||||||| | |||| |||| |||||||| ||||||| |  |||| |||||||||| |||||    
T  20809697 aaaatatagttaagttgtttaaataattaaaaagtatgaagtaatataaaatattaagtcaagtctatttataccatcaaat 20809616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 29096199 - 29096142
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaata 68  Q
    |||||||||| || ||||||||| ||| |||||||||||||| || |||||| |||||    
T  29096199 atgaatatttaaataatgtagttgagtggtttaaataattgaaaaatgtgaagtaata 29096142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 10682508 - 10682583
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaa 79  Q
    |||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||    
T  10682508 gagtgacatggatatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaa 10682583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 2844143 - 2844210
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||| |||||||||||| ||| ||||||||||||| |||||||||| ||||||||| |||||    
T  2844143 atgaatatttaaaaaatgtagttgagtggtttaaataattgggaagtgtgaagtaatataatgtatta 2844210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 34427089 - 34427151
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    |||||| ||||| |||||| |||||||||||||||| |||||||| || ||| ||||||||||    
T  34427089 atatttaaaaaaagtagttgagtagtttaaataattaagaagtgttaagtaacataatatatt 34427151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 31602201 - 31602141
Alignment:
Q  40 tttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccacc 100  Q
    ||||||||||||||||||||||| |||||||| ||||| |||   ||| ||||||||||||    
T  31602201 tttaaataattgagaagtgtgaattaatataaaatattgaatgaggtctatttataccacc 31602141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 19763631 - 19763564
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||  |||||||| || ||| |||||||||||||  ||||||||| |||||||| ||||||    
T  19763631 atgaatatttagaaaatgtaattaagtggtttaaataattggaaagtgtgaagtaatataaaatatta 19763564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 30775423 - 30775374
Alignment:
Q  29 tagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||| ||| |||||||||||||| ||||||||| ||||||||| |||||    
T  30775423 tagttgagtggtttaaataattgaaaagtgtgaagtaatataatgtatta 30775374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 5191347 - 5191411
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaata 68  Q
    |||||| |||||||||||||||||||| || |||||||||| ||||||| ||||||||| |||||    
T  5191347 gagtgatatgaatatttgaaaaatgtaattgagtagtttaagtaattgaaaagtgtgaagtaata 5191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 27107858 - 27107771
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaa 103  Q
    |||||| |||||| ||||| |||||||||| ||||| ||||||||||  ||||||| ||||||| || || || |||||||||||||||    
T  27107858 atatttaaaaaatatagttgagtagtttaactaatt-agaagtgtgatgtaatatattatattagatggaatccatttataccaccaaa 27107771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 35158963 - 35158895
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaa 79  Q
    ||||||||||  ||||||||||| ||| ||||||||||||| |||||||  | ||||||||||||||||    
T  35158963 atgaatatttagaaaatgtagttgagtggtttaaataattgggaagtgtccagtaatataatatattaa 35158895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 11425577 - 11425510
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||  ||||||||||| ||| | ||||||||||| ||||||| || |||||||||||||||    
T  11425577 atgaatatttagaaaatgtagttgagtcggttaaataattgggaagtgtaaagtaatataatatatta 11425510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 9682379 - 9682427
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  9682379 aaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataa 9682427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 37479211 - 37479267
Alignment:
Q  22 aaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||||| ||| |||||||||||||| |||| | || |||||||||||||||    
T  37479211 aaaaatgtagttgagtggtttaaataattgaaaagtttaaagtaatataatatatta 37479267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 1156298 - 1156339
Alignment:
Q  29 tagtttagtagtttaaataattgagaagtgtgaactaatata 70  Q
    ||||||||| ||||||||||||| |||||||||| |||||||    
T  1156298 tagtttagtggtttaaataattgggaagtgtgaaataatata 1156339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 17312874 - 17312919
Alignment:
Q  26 atgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    |||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  17312874 atgtagttgagtggtttaaataattgaaaagtgtgaagtaatataa 17312919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 40713835 - 40713778
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataat 72  Q
    |||||| |||||||| ||||| | |||||||||||| | ||||||||| |||||||||    
T  40713835 atatttaaaaaatgtggtttacttgtttaaataatttaaaagtgtgaaataatataat 40713778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 27594274 - 27594334
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||  ||||||||||| ||| |||||||||||||  | ||||||| ||||||||    
T  27594274 atgaatatttagaaaatgtagttgagtggtttaaataattggaaggtgtgaaataatataa 27594334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 56607 - 56662
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||    
T  56607 aaaatgtagttgagtggtttaaataattgagaagtgtaaagtaatataatatatta 56662  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 27641605 - 27641515
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttataccaccaaattg 106  Q
    ||||||| ||||| |||||  || |||||||||| |||||||| |||||||||||||| |||| ||||  ||| ||||||||||||||||||    
T  27641605 atatttggaaaatttagttgggtggtttaaataactgagaagtatgaactaatataatgtattgaata-tgtccatttataccaccaaattg 27641515  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 43496484 - 43496421
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||| |||||||||||| | |||||||||||||||||||||||||  ||||||||| |||||    
T  43496484 atatttaaaaaatgtagttgaatagtttaaataattgagaagtgtgaggtaatataatgtatta 43496421  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 47394462 - 47394395
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||| ||||||||||   ||||||||||||||||| |||||||||| ||||||||| |||||    
T  47394462 atgaatatttaaaaaatgtagacgagtagtttaaataattgggaagtgtgaagtaatataatgtatta 47394395  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 16679996 - 16679936
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatata 75  Q
    |||||||||||||||| || | | ||| |||||||||||||||||||| ||||||||||||    
T  16679996 atatttgaaaaatgtaattgaatggttaaaataattgagaagtgtgaagtaatataatata 16679936  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 26707131 - 26707191
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||  ||||||||||| | | |||||||||||||| ||||||||||||||||||    
T  26707131 atgaatatttagaaaatgtagttgaatggtttaaataattgaaaagtgtgaactaatataa 26707191  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1035823 - 1035776
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatata 70  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  1035823 aaaatatagtttagtggtttaaataattgagaagtgtgaaataatata 1035776  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 19322831 - 19322891
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatata 75  Q
    |||||| |||||||||||| | | ||||||||||||||||||| || | ||||||||||||    
T  19322831 atatttaaaaaatgtagttgaatggtttaaataattgagaagtatgtagtaatataatata 19322891  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 46823651 - 46823699
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  46823651 aaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataa 46823699  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 7900234 - 7900179
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    ||||||||||| ||| ||||||||||||| ||||| | || |||||||||||||||    
T  7900234 aaaatgtagttgagtggtttaaataattgggaagtataaagtaatataatatatta 7900179  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 10574370 - 10574437
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||||||| |||||| || || |||  |||||||||||||||| |||||| ||||||| |||||||    
T  10574370 atgaatatttaaaaaatataattgagtgatttaaataattgagaaatgtgaagtaatatattatatta 10574437  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 50428497 - 50428551
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    ||||| ||||| |||  ||||||||||||||||||||||| ||||||||| ||||    
T  50428497 aaaatatagttgagtgatttaaataattgagaagtgtgaagtaatataatttatt 50428551  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 19466385 - 19466340
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtg 60  Q
    |||||| |||||| ||||  ||||||||||||||||||||||||||    
T  19466385 atatttaaaaaatatagtggagtagtttaaataattgagaagtgtg 19466340  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 51613333 - 51613285
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||| ||| |||||||||||||  ||||||||| ||||||||    
T  51613333 aaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataa 51613285  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 4925164 - 4925098
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatata 70  Q
    |||||| ||| |||||| |||||||||||| ||| |||||||||||||| ||||||||| |||||||    
T  4925164 gagtgatatggatatttaaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatata 4925098  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 14913551 - 14913485
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatt 77  Q
    ||||||||||  ||||| |||||||||||||||||||||||| |||||| || ||||||||| ||||    
T  14913551 atgaatatttagaaaatatagtttagtagtttaaataattgaaaagtgtaaaataatataatgtatt 14913485  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 34383718 - 34383771
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatat 76  Q
    |||||||||||| || ||||||||||||||||||||| || |||||||||||||    
T  34383718 aaaatgtagttttgtggtttaaataattgagaagtgtaaagtaatataatatat 34383771  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 14593955 - 14593868
Alignment:
Q  11 atgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatattaaatagagtcgatttatacca 98  Q
    ||||||||||  |||||||| || | | ||||||||||||||||  |||||| |||||||||||||| | | ||||| ||||||||||    
T  14593955 atgaatatttataaaatgtaattgaatggtttaaataattgagatttgtgaagtaatataatatattgagtggagtccatttatacca 14593868  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 34769580 - 34769643
Alignment:
Q  15 atatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||| |||||||||||| | | ||||||||||||| |||||||||  ||||||||| |||||    
T  34769580 atatttaaaaaatgtagttgaatggtttaaataattgggaagtgtgaggtaatataatgtatta 34769643  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 37902402 - 37902457
Alignment:
Q  22 aaaaatgtagtttagtagtttaaa-taattgagaagtgtgaactaatataatatat 76  Q
    |||||||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  37902402 aaaaatgtagttgagtagtttaaaatatttgagaagtgtaaagtaatataatatat 37902457  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 39060294 - 39060220
Alignment:
Q  4 gagtgagatgaatatttgaaaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataatatatta 78  Q
    |||||| ||| ||||||  ||||| ||||| ||| ||||||||||| || ||||||||| ||||||||| |||||    
T  39060294 gagtgatatggatatttagaaaatatagttgagtggtttaaataatcgaaaagtgtgaagtaatataatgtatta 39060220  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 9959336 - 9959384
Alignment:
Q  23 aaaatgtagtttagtagtttaaataattgagaagtgtgaactaatataa 71  Q
    ||||||||||| |||||||||||||||||  ||||||||| || |||||    
T  9959336 aaaatgtagttgagtagtttaaataattggaaagtgtgaagtagtataa 9959384  T

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Target: scaffold0867 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 3546 - 3598
Alignment:
Q  48 attgagaagtgtgaactaatataatatattaaatagagtcgatttataccacc 100  Q
    ||||||||||||||| |||||||||||||||| | | ||| ||||| ||||||    
T  3546 attgagaagtgtgaagtaatataatatattaagtggggtctatttaaaccacc 3598  T

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