View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_low_14 (Length: 290)
Name: NF4538_low_14
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 38891724 - 38891531
Alignment:
| Q |
12 |
atgaacaagacagcgtgatagaagaaggcagtgcagtgcagtgcagtgcaggtccannnnnnnnaacgttggggggctattctgactgagatttgtttcc |
111 |
Q |
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| T |
38891724 |
atgaacaagacagcgtgatagaagaaggcagtgcagtgcag----gtccagg-----gggggggaacgttggggggctattctgactgagatttgtttcc |
38891634 |
T |
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| Q |
112 |
cttaacaaaaccaaacaaaagccaataaggtaagagaaagagaatattatgactcatacaaagaagaaaggaatagtcagaattaacaagtattattttc |
211 |
Q |
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| T |
38891633 |
cttaacaaaaccaaacaaaagccaataaggtaagagaaagagaatattatgactcatacaaagaagaaaggaatagtcagaattaacaagtattattttc |
38891534 |
T |
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