View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_low_19 (Length: 237)
Name: NF4538_low_19
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 38081105 - 38080906
Alignment:
| Q |
18 |
ctaaccaacatatcaaaatataacaacaaataaaggagcctatatgggataagttttaggcacgcacataagaactgagttatcccaaattcctcctata |
117 |
Q |
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| T |
38081105 |
ctaaccaacatatcaaaatataacaacaaataaaggagc----atgggataagttttaggcacgcacataagaactgagttatcccaaattcctcctata |
38081010 |
T |
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| Q |
118 |
tatataaccgaaccattacttcacttcacttgtattcaaggatcatgttgttctcaggagccaatccaacacaagctctcagaatgttttccagcataga |
217 |
Q |
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| T |
38081009 |
ta----accgaaacattacttcacttcacttgtattcaaggatcatgttgttctcaggagccaatccaacacaagctctcagaatgttttccagcataga |
38080914 |
T |
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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 39701145 - 39701073
Alignment:
| Q |
142 |
ttcacttgtattcaaggatcatgttgttctcaggagccaatccaacacaagctctcagaatgttttccagcat |
214 |
Q |
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| T |
39701145 |
ttcacttgtactcgaggatcatgttgttctctggagccaatccaacacaagctctcatgatgttttcaagcat |
39701073 |
T |
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