View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_low_2 (Length: 516)
Name: NF4538_low_2
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 67 - 498
Target Start/End: Complemental strand, 41795810 - 41795379
Alignment:
| Q |
67 |
tcattggtatatgttggaaaattaggaatggaaatgagtcaaccgtcattgggtgagacacaacaaaggttacttccagctatggatgaaatgaacattg |
166 |
Q |
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| T |
41795810 |
tcattggtgtatgttggaaaattaggaatggaaatgagtcaaccgtcattgggtgagacacaacaaaggttacttccagctatggatgaaatgaacattg |
41795711 |
T |
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| Q |
167 |
atggaaataattatagagagaagaagaagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctagaccctgaaag |
266 |
Q |
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| T |
41795710 |
atggaaataattatagagagaagaagaagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctagaccctgaaag |
41795611 |
T |
|
| Q |
267 |
gaagatgaagctttcaagagagctagggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacac |
366 |
Q |
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| T |
41795610 |
gaagatgaagctttcaagagagctagggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacac |
41795511 |
T |
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| Q |
367 |
ttgtatgatgttttgaaacaagaatttgatgttgtctccaaggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataaggt |
466 |
Q |
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| T |
41795510 |
ttgtatgatgttttgaaacaagaatttgatgttgtctccaaggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataaggt |
41795411 |
T |
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| Q |
467 |
aggatgaatttgaatgaaattggaatgagata |
498 |
Q |
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| T |
41795410 |
aggatgaatttgaatgaaattggaatgagata |
41795379 |
T |
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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 187 - 375
Target Start/End: Original strand, 26932144 - 26932332
Alignment:
| Q |
187 |
aagaagaagagattaacaagtaaccagattgattcactggagaagagtttccaagaagaaataaagctagaccctgaaaggaagatgaagctttcaagag |
286 |
Q |
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| T |
26932144 |
aagaaaaagcgattaacgagtgaacagatggaatcactggagagtagttttcaagaggagatcaaactagaccctcaaaggaagatgaagctttccaagg |
26932243 |
T |
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| Q |
287 |
agctagggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaacacttgtatgat |
375 |
Q |
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| T |
26932244 |
agttagggctacagcctcgtcaaattgctatttggttccaaaatagacgtgctaggtggaagaccaagcaacttgaacacttatatgat |
26932332 |
T |
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