View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_low_20 (Length: 231)
Name: NF4538_low_20
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 4724793 - 4724995
Alignment:
| Q |
17 |
catcaatatcctctcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccat |
116 |
Q |
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| T |
4724793 |
catcaatatcctctcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccat |
4724892 |
T |
|
| Q |
117 |
tgtgcttcaatttgcaattgttgtctcatgaactcatccaaaatttccttcaaattgcggaagaaacttttgctactaccgctttcgttttctacctttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4724893 |
tgtgcttcaatttgcaattgttgtctcatgaactcatccaaaatttccttcaaattgcggaagaaacttttgctactaccgctttcgttttctacctttg |
4724992 |
T |
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| Q |
217 |
ctt |
219 |
Q |
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||| |
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| T |
4724993 |
ctt |
4724995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 25259543 - 25259387
Alignment:
| Q |
17 |
catcaatatcctctcattctcaagcatttccatttgttgtctccactccatctccctcaacctcctttcattctctctagcttcaaatgcttccatccat |
116 |
Q |
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||||| ||||||||||||||| | ||||||| ||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
25259543 |
catcattatcctctcattctccaatgcttccattctttgtctccactccatctccttcaatctcctctcattctctcttgcttcaaatgcttccatccat |
25259444 |
T |
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| Q |
117 |
tgtgcttcaatttgcaattgttgtctcatgaactcatccaaaatttccttcaaattg |
173 |
Q |
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|| ||||| ||||||| |||||| ||||| ||||| || | ||| |||||||||||| |
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| T |
25259443 |
tgagcttccatttgcatttgttgcctcataaactcctcaagaatctccttcaaattg |
25259387 |
T |
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