View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538_low_3 (Length: 499)

Name: NF4538_low_3
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538_low_3
NF4538_low_3
[»] chr4 (20 HSPs)
chr4 (18-499)||(1547992-1548474)
chr4 (353-499)||(1552668-1552817)
chr4 (209-499)||(546962-547255)
chr4 (216-499)||(570400-570680)
chr4 (323-499)||(1600468-1600647)
chr4 (453-499)||(8187095-8187141)
chr4 (394-493)||(644885-644984)
chr4 (245-493)||(21834174-21834422)
chr4 (453-499)||(1519146-1519192)
chr4 (372-493)||(53761692-53761816)
chr4 (308-499)||(3438422-3438616)
chr4 (436-499)||(532238-532301)
chr4 (394-493)||(553534-553633)
chr4 (453-499)||(8184034-8184080)
chr4 (238-423)||(8186877-8187065)
chr4 (458-499)||(659758-659799)
chr4 (439-499)||(1537757-1537817)
chr4 (453-499)||(1489365-1489411)
chr4 (453-499)||(12121461-12121507)
chr4 (453-493)||(1513411-1513451)
[»] chr8 (7 HSPs)
chr8 (245-499)||(18315066-18315323)
chr8 (214-345)||(17627821-17627952)
chr8 (394-493)||(28246240-28246339)
chr8 (298-493)||(32151356-32151551)
chr8 (448-499)||(21235607-21235658)
chr8 (317-495)||(17636262-17636447)
chr8 (453-499)||(27922557-27922603)
[»] chr3 (6 HSPs)
chr3 (209-499)||(51113541-51113831)
chr3 (284-499)||(13470567-13470782)
chr3 (218-347)||(514494-514623)
chr3 (284-493)||(51764275-51764484)
chr3 (392-499)||(51120836-51120943)
chr3 (453-493)||(1657306-1657346)
[»] chr2 (3 HSPs)
chr2 (214-417)||(32785537-32785740)
chr2 (291-499)||(1037503-1037714)
chr2 (453-499)||(32785776-32785822)
[»] chr7 (2 HSPs)
chr7 (319-498)||(10614643-10614822)
chr7 (245-493)||(15091947-15092195)
[»] chr6 (21 HSPs)
chr6 (371-499)||(6432210-6432341)
chr6 (318-498)||(7119207-7119387)
chr6 (318-498)||(7131685-7131865)
chr6 (433-499)||(12102315-12102381)
chr6 (371-499)||(6394913-6395044)
chr6 (371-499)||(6416015-6416146)
chr6 (275-493)||(6426566-6426784)
chr6 (371-498)||(6402910-6403040)
chr6 (391-499)||(6589265-6589373)
chr6 (394-493)||(11936220-11936319)
chr6 (394-493)||(11948200-11948299)
chr6 (433-499)||(6410055-6410121)
chr6 (371-499)||(6594525-6594656)
chr6 (435-499)||(6423266-6423330)
chr6 (376-492)||(19632495-19632611)
chr6 (284-347)||(9411556-9411619)
chr6 (245-346)||(6432363-6432464)
chr6 (437-493)||(6596916-6596972)
chr6 (42-118)||(9411788-9411864)
chr6 (436-499)||(9410751-9410814)
chr6 (448-499)||(9411404-9411455)
[»] chr5 (5 HSPs)
chr5 (289-499)||(41889391-41889604)
chr5 (392-499)||(20478025-20478132)
chr5 (456-499)||(41901542-41901585)
chr5 (324-495)||(32267528-32267699)
chr5 (312-421)||(41901398-41901510)
[»] chr1 (3 HSPs)
chr1 (209-343)||(9581276-9581410)
chr1 (245-499)||(19468295-19468549)
chr1 (234-343)||(9586844-9586953)


Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 1547992 - 1548474
Alignment:
Q  18 ccatcatatttcggtgtcctgaagtaaccaacgttggtattgcttctgctctcggtgaggcactaacattaaggtctttatcctttaccaattattttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547992 ccatcatatttcggtgtcctgaagtaaccaacgttggtattgcttctgctctcggtgaggcactaacattaaggtctttatcctttaccaattattttga 1548091  T
Q  118 accccgagaatgttcaatgttgtttgacctcgttaagaacagtccttcacttagtgagatcagaatggaatacaactttggaaatagttttgagacttct 217  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1548092 accccaagaatgttcgatgttgtttgacctcgttaagaacagtccttcacttagtgagatcagaatggaatacaactttgaaaatagttttgagacttct 1548191  T
Q  218 aattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548192 aattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcga 1548291  T
Q  318 ttttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaa 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548292 ttttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaa 1548391  T
Q  418 cttagctcgtagtttaaaagtgaagctac-ttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548392 cttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 1548474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 353 - 499
Target Start/End: Original strand, 1552668 - 1552817
Alignment:
Q  353 tgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtt---taaaagtgaagctacttg 449  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||   || ||| |||||||||||    
T  1552668 tgcactggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaacttagcccatagttttatagaagggaagctacttg 1552767  T
Q  450 gactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  1552768 gactgaactttgaaattcccaaactggaagtgttgaatttgtcacataca 1552817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 209 - 499
Target Start/End: Complemental strand, 547255 - 546962
Alignment:
Q  209 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 308  Q
    |||| |||||||||||||| |||  |||||||||| |||||||| ||||| |||  |||| || | |||||| || |||||||||||| ||||||||| |    
T  547255 gagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggctaaaaattcatgcataagagatgaaagcatcaaaatgt 547156  T
Q  309 tttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagat 405  Q
    || |||| || |||||||||||||||||||||||||| | | ||||  ||  |||||| || ||  |||||||||| ||||||   ||||||||||||||    
T  547155 ttccttccatgttccccaatttgcaactgcttgatttaagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagat 547056  T
Q  406 tagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
     || || ||||||||| |   | |||||  |||||| ||| ||||| ||||||||||| |||| ||| |||||||| |||||||||||| ||||    
T  547055 aaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtaca 546962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 216 - 499
Target Start/End: Complemental strand, 570680 - 570400
Alignment:
Q  216 ctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttc 315  Q
    |||||||||  |||||  |||||||||  | |||||| ||||| || |  ||||||| |||| || | ||||| ||||||| |||   ||| ||| ||||    
T  570680 ctaattcttcaatggaatttgttgtaaaccatcaattgaagtctctattcttgactcgcaatacatggttaagtgatgaaaacattttaatgtttgcttc 570581  T
Q  316 gattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttg 415  Q
     |||||||||||||||||  | |||||||| | | |||||| |   |||||   |||  |||||||| |||||||||||||||||||  |||| || |||    
T  570580 tattttccccaatttgcagatacttgatttaagttattgcaatcagatatc---cgatagtatttgtcaagttttaagatgttgtaaacttaggcatttg 570484  T
Q  416 aacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||   | | ||||||||| || | |||| ||||||||||| ||| |||||| |||||||||||||||||| |||||    
T  570483 aacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 570400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 499
Target Start/End: Complemental strand, 1600647 - 1600468
Alignment:
Q  323 cccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagattagacagttgaact 419  Q
    |||||||||||||||||||||||||  | ||||| |  |||||| || |||||||||||| ||||||||   |||| || ||| |||||||| |||||||    
T  1600647 cccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaact 1600548  T
Q  420 tagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||| |   ||| || | ||||||| |  ||| ||||||||||| |||  |||||||||||||||||||||||| |||||    
T  1600547 tagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatataca 1600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 8187095 - 8187141
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  8187095 tgaactttgaaatttccaaactggaggtgttgaacttgtcacataca 8187141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 644984 - 644885
Alignment:
Q  394 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||||| |||||||| ||||| ||| ||||  ||| || | |||||||||||  | ||||||||||| |||||||||||||||||||  ||||||||    
T  644984 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacttacattgaactttgaagttcccaaactggaggtgttagacttgtca 644885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 493
Target Start/End: Original strand, 21834174 - 21834422
Alignment:
Q  245 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 344  Q
    |||||||||||||| |||| ||||   | ||||||| | ||||  |||||||  |||| ||| ||| |||| |||||||||||||| || ||||||||||    
T  21834174 cctcaattaaagtctctctttttgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatt 21834273  T
Q  345 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaa 441  Q
    ||| |  || ||     ||||||||   ||||||||| |||||||||||   ||||||||||||||  || ||||||||| |  || |||  ||||||||    
T  21834274 tgacttcttccacacagatatcaga---aggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaa 21834370  T
Q  442 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||| | |  | ||||||| | ||||||| |||||||||||| ||||||||    
T  21834371 gctacatagtatcaactttgtagttcccaagctggaggtgttggacttgtca 21834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 1519146 - 1519192
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacataca 1519192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 493
Target Start/End: Original strand, 53761692 - 53761816
Alignment:
Q  372 aaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcc 468  Q
    ||||||||||| ||||||||||   ||||||||| ||||| || |||||||||||     ||| || |||||||||| ||||| ||||||||| | ||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcc 53761791  T
Q  469 caaactggaggtgttgaacttgtca 493  Q
    ||| || |||| |||||||||||||    
T  53761792 caagctagaggcgttgaacttgtca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 499
Target Start/End: Original strand, 3438422 - 3438616
Alignment:
Q  308 ttttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaaga 404  Q
    |||||||| ||||||||||||||||| ||||||||| |||   | |||     |||||| ||||||||| ||  | ||||||||||   |||||||||||    
T  3438422 ttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgactacatatctgacgaaggtgttattcaagttttaaggagatgttgtaaga 3438521  T
Q  405 ttagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||| |||||||||||| || |||||  ||||||  |   || | ||||||||||  || | ||| ||||||| |||| |||||||||||||    
T  3438522 ttagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtattgagcttgtcacataca 3438616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 499
Target Start/End: Complemental strand, 532301 - 532238
Alignment:
Q  436 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||| ||||||||| ||||||||||| | ||||| || |||||||||||||||||| |||||    
T  532301 agtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatataca 532238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 553633 - 553534
Alignment:
Q  394 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||||| |||||||| ||||||||| | ||  ||| || ||||||| ||| |  | |||||||| || ||| |||||||||||||||||||||||||    
T  553633 atgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtca 553534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 8184034 - 8184080
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacataca 8184080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 423
Target Start/End: Original strand, 8186877 - 8187065
Alignment:
Q  238 tgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactg 337  Q
    ||||||||||||| | ||||| ||| |||||| | ||||||   | |||||  |||||| | || |||| || |||||  | ||||||||||||||  ||    
T  8186877 tgtaagacctcaactgaagtctctcagtttgatttacaattgttggttaagtaatgaaaacctcgaaatgttatcttccttattccccaatttgcagttg 8186976  T
Q  338 cttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttt---aagatgttgtaagattagacagttgaacttagc 423  Q
    |||||||||| | |||||  || |||||| || |||||||||||| |||||||    ||||||||| |||||||  | |||||||||||    
T  8186977 cttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaacttagc 8187065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 458 - 499
Target Start/End: Complemental strand, 659799 - 659758
Alignment:
Q  458 tttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacataca 659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 1537757 - 1537817
Alignment:
Q  439 gaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||| | |||| ||||||||||| |||||||||| || ||||||||||||||| |||||    
T  1537757 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 1537817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 1489365 - 1489411
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||| |||||||||| || ||||||||||||||| |||||    
T  1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 1489411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 12121461 - 12121507
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||| |||||||||| || ||||||||||||||| |||||    
T  12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 12121507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 493
Target Start/End: Original strand, 1513411 - 1513451
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtca 1513451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 245 - 499
Target Start/End: Original strand, 18315066 - 18315323
Alignment:
Q  245 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 344  Q
    |||||||||||||| ||| |||| |||  ||||||| | |||||||| |||| |||||||||||||||||| |||||||||||||||||  |||||||||    
T  18315066 cctcaattaaagtctctccgttttacttgcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgatt 18315165  T
Q  345 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgta---agattagacagttgaacttagctcgtagtttaaaagtgaa 441  Q
    |||   | |||  |  |||| | || |||||||||||| |||||||| || |||||    ||||||||||||||||||||||||||  || || | ||||    
T  18315166 tgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaacttagctcgtgattcaagaatgaa 18315265  T
Q  442 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||    
T  18315266 gctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacataca 18315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 17627821 - 17627952
Alignment:
Q  214 ttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttct 313  Q
    ||||||||||||  ||||  | |||||||| ||||||||||| || |||| |||| ||  |||||||    || | ||||||| ||||||||| ||| ||    
T  17627821 ttctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgtttgct 17627920  T
Q  314 tcgattttccccaatttgcaactgcttgattt 345  Q
    || |||||||||||||||||||||||||||||    
T  17627921 tccattttccccaatttgcaactgcttgattt 17627952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 28246240 - 28246339
Alignment:
Q  394 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||||| |||||||| ||||| ||| ||||| ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||    
T  28246240 atgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactttgaagttcccaaactggaggtgttggacttgtca 28246339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 493
Target Start/End: Complemental strand, 32151551 - 32151356
Alignment:
Q  298 catcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgt 397  Q
    ||||||||| ||| |||| |||||||| ||||||||||||||||||||||    ||||  |  |||||| || ||||| |||||| |||||||||||||     
T  32151551 catcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaagatgc 32151452  T
Q  398 tgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    | | ||||||| || ||||| ||  |  |  ||||| | |||||||| | |||| ||||||| ||| || |||| ||||||||||| |||||||||    
T  32151451 tctgagattaggcatttgaatttcaccggctgtttacatgtgaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtca 32151356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 499
Target Start/End: Complemental strand, 21235658 - 21235607
Alignment:
Q  448 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 495
Target Start/End: Original strand, 17636262 - 17636447
Alignment:
Q  317 attttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagt 413  Q
    ||||||||||||||||| |||||||||||     |||||| |   ||||||||  ||||||||||| ||||||||||   ||||| ||| ||||| || |    
T  17636262 attttccccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatt 17636361  T
Q  414 tgaacttagctcgtagtttaaaagtgaagctacttggac----tgaactttgaaattcccaaactggaggtgttgaacttgtcaca 495  Q
    |||||||||  ||  ||| || |||||| |||| | ||     ||||||||||| |||||||| ||||||||||||||||||||||    
T  17636362 tgaacttaggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaagttcccaaattggaggtgttgaacttgtcaca 17636447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Complemental strand, 27922603 - 27922557
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||    
T  27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatataca 27922557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 499
Target Start/End: Original strand, 51113541 - 51113831
Alignment:
Q  209 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 308  Q
    |||| |||||||||||| ||||   ||||||||||||| ||||||||||| |||   |||  ||||||| || | ||||||||||| | ||||| |||      
T  51113541 gagaattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctccagttggatcacaatccatggttaagagatgagagcatcataatga 51113640  T
Q  309 tttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaa---gatgttgtaagat 405  Q
    || |||| |||||||||||| |||| || |||||||| | | |||||  ||  |||||   ||||||||||||| |||||||||   |||||||||| ||    
T  51113641 ttgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatc---cgaaggtatttgtcaagttttaaagagatgttgtaaaat 51113737  T
Q  406 tagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||| || ||||| ||||||    ||| |||| |||||||||||||| |||||||||||  ||||||||||||||||||  |||||||| |||||    
T  51113738 taggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaataca 51113831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 284 - 499
Target Start/End: Original strand, 13470567 - 13470782
Alignment:
Q  284 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtg 383  Q
    ||||| ||||||  ||||| ||| ||| |||| | ||||||||||||||| ||||||||||||| |  ||||| |  | ||||| |   ||||||||||     
T  13470567 ttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatcaaa---aggtatttgtc 13470663  T
Q  384 aagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggt 480  Q
    ||||||||||   ||||||||||||||| || |||||||||||   | ||  ||||||||||||||||||| |||||||||   ||||||| ||||||||    
T  13470664 aagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggt 13470763  T
Q  481 gttgaacttgtcacataca 499  Q
    ||||||||||||| |||||    
T  13470764 gttgaacttgtcaaataca 13470782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 347
Target Start/End: Original strand, 514494 - 514623
Alignment:
Q  218 aattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcga 317  Q
    ||||||||  ||||| ||||||| |  ||||||||||| || |||| |||| ||||||||||| ||||||||||||||| | | | ||| ||| |||| |    
T  514494 aattctttgttggactttgttgtgaaccctcaattaaaatctctctatttggctcacaattcatgcttaagagatgaaaaccttataatgtttgcttcaa 514593  T
Q  318 ttttccccaatttgcaactgcttgatttga 347  Q
    ||||||| |||||||| ||  |||||||||    
T  514594 ttttcccgaatttgcagctaattgatttga 514623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 493
Target Start/End: Original strand, 51764275 - 51764484
Alignment:
Q  284 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtg 383  Q
    ||||| ||||||| ||||| ||| ||| |||| ||||||||||||||||| ||||||||||| | |  ||||| | |||||||     ||||| | ||||    
T  51764275 ttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatc---taaaggtgtctgtg 51764371  T
Q  384 aagtttta---agatgttgtaagattagacagttgaacttagctcgta-gtttaaaagtgaagctacttggactgaactttgaaattcccaaactggagg 479  Q
    ||||||||   ||||||| ||||||||| || |||||| || | || | ||| || |||||||||||||||| ||||||||| | |||| || |||||||    
T  51764372 aagttttaaggagatgttctaagattaggcatttgaacctatc-cgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggagg 51764470  T
Q  480 tgttgaacttgtca 493  Q
    ||||  ||||||||    
T  51764471 tgttagacttgtca 51764484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 499
Target Start/End: Original strand, 51120836 - 51120943
Alignment:
Q  392 agatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgt 491  Q
    ||||||||||| |||||||| ||||||||  |  || ||| || |||||| || | |||| ||||||||||| ||| |||| ||||||||||||||||||    
T  51120836 agatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgt 51120935  T
Q  492 cacataca 499  Q
    | ||||||    
T  51120936 cgcataca 51120943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 1657346 - 1657306
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtca 1657306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 417
Target Start/End: Original strand, 32785537 - 32785740
Alignment:
Q  214 ttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttct 313  Q
    |||||||||||| |||||  |||||||||  |||||||||||||  |||  |||| ||| |||||   | ||||||||||||| |||||  || ||||||    
T  32785537 ttctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttct 32785636  T
Q  314 tcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagt 413  Q
    || |||||  ||||||||||||| ||||||||||   |||||  |  |||||| || |||||||||||| || |||||||||||| |||||||||||| |    
T  32785637 tctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatt 32785736  T
Q  414 tgaa 417  Q
    ||||    
T  32785737 tgaa 32785740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 499
Target Start/End: Original strand, 1037503 - 1037714
Alignment:
Q  291 atgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttt 390  Q
    |||||| ||||| | | ||| |||| |||||||||||||||||| | ||||||||||     |||  |  |||||| || ||||||||||||||||||||    
T  1037503 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagtttt 1037602  T
Q  391 a---agatgttgtaagattagacagttgaacttag-ctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaa 486  Q
    |   |||||||||||| ||||||| ||||| |||| ||  || || || |||||| |||||| || | |||||| || ||||  || | |||||||| ||    
T  1037603 aaggagatgttgtaaggttagacatttgaatttagcctacta-ttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaa 1037701  T
Q  487 cttgtcacataca 499  Q
    |||||||||||||    
T  1037702 cttgtcacataca 1037714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 32785776 - 32785822
Alignment:
Q  453 tgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||||| ||  ||||||||| ||||||||||||||||||||||||    
T  32785776 tgaactttaaagctcccaaactagaggtgttgaacttgtcacataca 32785822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 319 - 498
Target Start/End: Complemental strand, 10614822 - 10614643
Alignment:
Q  319 tttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttg 415  Q
    ||||||||||||||||||||||||||||| |  ||||| |  | |||   | |||||||||||| ||||||||||   ||||||||||||||| || |||    
T  10614822 tttccccaatttgcaactgcttgatttgaatcgttgcaatctcttat---atgaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttg 10614726  T
Q  416 aacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 498  Q
    ||||||||   | ||  ||||||||||||||||||| ||||| |||   ||||||| ||||||||||||||||||||| ||||    
T  10614725 aacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatac 10614643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 493
Target Start/End: Original strand, 15091947 - 15092195
Alignment:
Q  245 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 344  Q
    |||||||||||||| |||| |||| |||||||||  || ||||| ||||||| ||||| |||| || |||| ||||||||||| ||  | || |||||||    
T  15091947 cctcaattaaagtctctctatttggctcacaattaccggttaagtgatgaaatcatcagaatacttgcttccattttccccaacttagagctacttgatt 15092046  T
Q  345 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaa 441  Q
    ||  | |||||  |  ||||||     ||||||||| | ||||||||||   ||||| |||| ||| ||| ||||||||| || |  ||||||  |||||    
T  15092047 tgggtcattgctataacatatc---tcaaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaa 15092143  T
Q  442 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
     |||| |||| ||||||||| | ||||| | |||||||||||||| ||||||    
T  15092144 actacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 15092195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 371 - 499
Target Start/End: Complemental strand, 6432341 - 6432210
Alignment:
Q  371 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 467  Q
    |||||||||||| ||||||||||   |||||||||  ||| ||| |||||||||||   | || ||||||||||||||| |||| ||||||||||| |||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttc 6432242  T
Q  468 ccaaactggaggtgttgaacttgtcacataca 499  Q
    |||| ||| ||||||||||||||||| |||||    
T  6432241 ccaagctgaaggtgttgaacttgtcaaataca 6432210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 498
Target Start/End: Complemental strand, 7119387 - 7119207
Alignment:
Q  318 ttttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagattagacagtt 414  Q
    ||||||||||||| ||||| |||||||||| || ||||| |  ||||||    |||||||||||| ||||||||   ||||||| |||||||| ||| ||    
T  7119387 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatc---tgaaggtatttgtcaagttttaaggagatgttctaagattaaacattt 7119291  T
Q  415 gaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 498  Q
    ||||||||| |   ||| || |||||||||||||||| |||||||||   ||| | | ||||||||||||||||||||| ||||    
T  7119290 gaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatac 7119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 498
Target Start/End: Complemental strand, 7131865 - 7131685
Alignment:
Q  318 ttttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtttta---agatgttgtaagattagacagtt 414  Q
    ||||||||||||| ||||| |||||||||| || ||||| |  ||||||    |||||||||||| ||||||||   ||||||| |||||||| ||| ||    
T  7131865 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatc---tgaaggtatttgtcaagttttaaggagatgttctaagattaaacattt 7131769  T
Q  415 gaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 498  Q
    ||||||||| |   ||| || |||||||||||||||| |||||||||   ||| | | ||||||||||||||||||||| ||||    
T  7131768 gaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatac 7131685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 12102381 - 12102315
Alignment:
Q  433 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||| || | |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  12102381 aaaagtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 499
Target Start/End: Complemental strand, 6395044 - 6394913
Alignment:
Q  371 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 467  Q
    |||||||||||| |||||||||    |||||||||| ||| ||| ||||||||||||    ||| ||||||||| |||| |||| ||||||||| | |||    
T  6395044 gaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttc 6394945  T
Q  468 ccaaactggaggtgttgaacttgtcacataca 499  Q
    || | ||||||||||||||||||||| |||||    
T  6394944 ccgagctggaggtgttgaacttgtcaaataca 6394913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 499
Target Start/End: Complemental strand, 6416146 - 6416015
Alignment:
Q  371 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 467  Q
    |||||||||||| |||||||||    ||||||||||||| | || |||||||||||   | ||  |||||||||||||| |||| || |||||| | |||    
T  6416146 gaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttc 6416047  T
Q  468 ccaaactggaggtgttgaacttgtcacataca 499  Q
    |||| ||||||||||||||||||||| |||||    
T  6416046 ccaacctggaggtgttgaacttgtcaaataca 6416015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 493
Target Start/End: Complemental strand, 6426784 - 6426566
Alignment:
Q  275 aattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaag 374  Q
    |||||| | ||||| ||||||| ||||| ||| | | |||| |||||||||||||| || || ||||||||||    |||| |||  ||||| ||   ||    
T  6426784 aattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctga---ag 6426688  T
Q  375 gtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaa 471  Q
    |||||||||||||||||||   |||||||||| ||| ||| ||||||||||||    ||| ||| ||||| |||| |||| ||||||||| | ||||| |    
T  6426687 gtatttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccga 6426588  T
Q  472 actggaggtgttgaacttgtca 493  Q
     |||||||||||||| ||||||    
T  6426587 gctggaggtgttgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 498
Target Start/End: Complemental strand, 6403040 - 6402910
Alignment:
Q  371 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 467  Q
    |||||||||||| ||||||||||   ||||||||| ||||| || ||||||||| || |  ||| || |||||||||||||||| | ||||||| | |||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc 6402941  T
Q  468 ccaaactggaggtgttgaacttgtcacatac 498  Q
    || |||| || ||||||||||||||| ||||    
T  6402940 cccaactagaagtgttgaacttgtcagatac 6402910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 499
Target Start/End: Original strand, 6589265 - 6589373
Alignment:
Q  391 aagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttg 490  Q
    |||||||||||||||||| || |||||||||||     ||   |||||||||||||||||| ||||||||| | ||||||  ||||||||||||||||||    
T  6589265 aagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttg 6589364  T
Q  491 tcacataca 499  Q
    ||| |||||    
T  6589365 tcaaataca 6589373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 11936220 - 11936319
Alignment:
Q  394 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||||| |||||||| ||||| ||| ||||  ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||    
T  11936220 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtca 11936319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 11948200 - 11948299
Alignment:
Q  394 atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||||| |||||||| ||||| ||| ||||  ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||    
T  11948200 atgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtca 11948299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 6410121 - 6410055
Alignment:
Q  433 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||||||||||| |||| ||||||||||| ||||||| ||| |||||||||||| |||| |||||    
T  6410121 aaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaataca 6410055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 499
Target Start/End: Original strand, 6594525 - 6594656
Alignment:
Q  371 gaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattc 467  Q
    |||||||||||| ||||||||||   ||||| |||||||| ||| ||| ||||| |  |  ||| || ||||||||||| |||| | ||||||  | |||    
T  6594525 gaaggtatttgtcaagttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttc 6594624  T
Q  468 ccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||||||||||||| |||||||| |||||    
T  6594625 ccaaactggaggtgttgtacttgtcaaataca 6594656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 499
Target Start/End: Complemental strand, 6423330 - 6423266
Alignment:
Q  435 aagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||||||||| || | |||||||| || ||||||| ||||||||||||||||||||| |||||    
T  6423330 aagtgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgtcaaataca 6423266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 492
Target Start/End: Complemental strand, 19632611 - 19632495
Alignment:
Q  376 tatttgtgaagttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactg 475  Q
    ||||||| |||||||||||||||||||||| |  || ||||||||| ||||  ||| || ||| || ||||||||| | ||||||  | ||||||| ||     
T  19632611 tatttgtcaagttttaagatgttgtaagataacgcatttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagcta 19632512  T
Q  476 gaggtgttgaacttgtc 492  Q
    ||||||||| |||||||    
T  19632511 gaggtgttggacttgtc 19632495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 9411619 - 9411556
Alignment:
Q  284 ttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttga 347  Q
    ||||||||| ||| ||||||||  ||| |||| ||||||||||||||||| |||||||||||||    
T  9411619 ttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttga 9411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 346
Target Start/End: Complemental strand, 6432464 - 6432363
Alignment:
Q  245 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 344  Q
    ||||| |||||||| |||| ||||  |||||||||| | |||||  ||||||  |||| ||| ||| |||| |||||||||||||||||||  |||||||    
T  6432464 cctcagttaaagtctctctatttgggtcacaattcatggttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatt 6432365  T
Q  345 tg 346  Q
    ||    
T  6432364 tg 6432363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 6596916 - 6596972
Alignment:
Q  437 gtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 493  Q
    ||||||| ||||| | | ||||||||||||||| | |||||||||||||||||||||    
T  6596916 gtgaagcgacttgaaataaactttgaaattccccagctggaggtgttgaacttgtca 6596972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 9411864 - 9411788
Alignment:
Q  42 taaccaacgttggtattgcttctgctctcggtgaggcactaacattaaggtctttatcctttaccaattattttgaa 118  Q
    ||||||| ||||| |||| |||||||||| |||||  || ||| || |||||||| |||||||| ||||||||||||    
T  9411864 taaccaaagttggcattgtttctgctctctgtgagagaccaaccttgaggtctttgtcctttactaattattttgaa 9411788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 499
Target Start/End: Complemental strand, 9410814 - 9410751
Alignment:
Q  436 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    ||||||| || ||||| |||||||||||  ||||||  ||||||||||||| ||||||||||||    
T  9410814 agtgaagttaattggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 499
Target Start/End: Complemental strand, 9411455 - 9411404
Alignment:
Q  448 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||| ||||||||||  ||||||| ||||||||||||||||||||| |||||    
T  9411455 tggattgaactttgaggttcccaagctggaggtgttgaacttgtcatataca 9411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 499
Target Start/End: Original strand, 41889391 - 41889604
Alignment:
Q  289 agatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagtt 388  Q
    |||||||  ||||| ||| ||| |||| |||||||| |||||||| || ||||||||||  |||||  || ||||||  || |||||||||  | |||||    
T  41889391 agatgaagacatcataatgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagtt 41889490  T
Q  389 ttaag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttga 485  Q
    |||||   ||||||||| |||||| | ||||||||| |  |  ||| || |||||||||||||| | |||||||| || |||||||| ||||||||||||    
T  41889491 ttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttga 41889590  T
Q  486 acttgtcacataca 499  Q
    |||| ||| |||||    
T  41889591 acttatcatataca 41889604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 499
Target Start/End: Original strand, 20478025 - 20478132
Alignment:
Q  392 agatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgt 491  Q
    |||||||||||| | || || |||||||||||| |  ||  || || ||||||||||||| | ||| ||| ||||||| | |||||||||||||||||||    
T  20478025 agatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaataaacgttgtaattccccagctggaggtgttgaacttgt 20478124  T
Q  492 cacataca 499  Q
    || |||||    
T  20478125 catataca 20478132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 499
Target Start/End: Original strand, 41901542 - 41901585
Alignment:
Q  456 actttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatataca 41901585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 495
Target Start/End: Complemental strand, 32267699 - 32267528
Alignment:
Q  324 ccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattagacagttgaactt 420  Q
    |||||||||| |||||||||||||  |||||  || ||||||| || ||||||||   | || |||||||   ||||||||| |||||||| ||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  421 agctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcaca 495  Q
    | | |   ||| || |||||| |||   | | ||||||||||| |||||||| ||||||| ||||||||||||||    
T  32267599 atcccagtgttcaacagtgaaacta---gaaatgaactttgaagttcccaaattggaggtattgaacttgtcaca 32267528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 41901398 - 41901510
Alignment:
Q  312 cttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaagattag 408  Q
    |||| ||||||||||||||||| |||||||||||||  |||||  || ||||||  || |||||||||  | ||||||||||    |||||||| |||||    
T  41901398 cttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgtaacattag 41901497  T
Q  409 acagttgaactta 421  Q
    ||| |||||||||    
T  41901498 acatttgaactta 41901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 343
Target Start/End: Complemental strand, 9581410 - 9581276
Alignment:
Q  209 gagacttctaattctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatat 308  Q
    |||| |||||| ||||||| |||  ||| |||||| |||||||||||||| ||   ||||  |||||||  | | ||||||||| ||| ||||| ||| |    
T  9581410 gagaattctaagtctttcaaggatattggtgtaagccctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgt 9581311  T
Q  309 tttcttcgattttccccaatttgcaactgcttgat 343  Q
    || |||| ||||||||||||||||| |||||||||    
T  9581310 ttgcttcaattttccccaatttgcagctgcttgat 9581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 499
Target Start/End: Original strand, 19468295 - 19468549
Alignment:
Q  245 cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt 344  Q
    |||||||||||||  ||||  ||| || | |||||| | ||||| ||||||| ||||| ||| ||| |||| ||||| ||||||||||| ||||||||||    
T  19468295 cctcaattaaagtatctctacttggctgagaattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatt 19468394  T
Q  345 tgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaaga---tgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaa 441  Q
    |||     ||||    |||||| ||   ||| |||||| ||||||||||    |||| ||| ||||| || || |||||||| |   ||| || ||||||    
T  19468395 tgaactcatgcaaccacatatcgga---aggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaa 19468491  T
Q  442 gctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 499  Q
     ||||||||| ||||||||| | ||||||| |||||||||||||| |||||| |||||    
T  19468492 tctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagataca 19468549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 9586953 - 9586844
Alignment:
Q  234 ttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgca 333  Q
    ||||||||||||||||||| ||||| ||   ||||  || ||||  | | ||||||||| ||| ||||| ||| ||| |||| |||||||||||||||||    
T  9586953 ttgttgtaagacctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgca 9586854  T
Q  334 actgcttgat 343  Q
     |||||||||    
T  9586853 gctgcttgat 9586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University