View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4538_low_6 (Length: 374)
Name: NF4538_low_6
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 43410524 - 43410867
Alignment:
| Q |
16 |
caggaggatcttgatactaagcaattactgctacatttcaacaacaacaataatcaaatcctacctccaagaccaactgtggcctggaacaacaacaatt |
115 |
Q |
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| T |
43410524 |
caggaggatcttgatactaagcaattactgctacatttcaac---aacaataatcaaatcctacctccaagaccaactgtggcctggaacaacaacaatt |
43410620 |
T |
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| Q |
116 |
cttcatcatcaacactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttag |
215 |
Q |
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| T |
43410621 |
cttcatcatcaacactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttag |
43410720 |
T |
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| Q |
216 |
agatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatca |
315 |
Q |
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| T |
43410721 |
agatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatca |
43410820 |
T |
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| Q |
316 |
tgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctca |
362 |
Q |
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| T |
43410821 |
tgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctca |
43410867 |
T |
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