View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4538_low_7 (Length: 365)

Name: NF4538_low_7
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4538_low_7
NF4538_low_7
[»] chr7 (23 HSPs)
chr7 (132-355)||(40515416-40515639)
chr7 (1-118)||(30863070-30863186)
chr7 (1-131)||(28327343-28327473)
chr7 (1-131)||(42711207-42711335)
chr7 (1-119)||(30623732-30623849)
chr7 (1-119)||(38129397-38129514)
chr7 (5-131)||(41913096-41913220)
chr7 (1-119)||(21699304-21699421)
chr7 (1-128)||(1690996-1691120)
chr7 (1-131)||(40942153-40942282)
chr7 (5-101)||(3910211-3910307)
chr7 (58-129)||(45461660-45461731)
chr7 (57-131)||(27956617-27956691)
chr7 (63-131)||(45857475-45857543)
chr7 (57-131)||(30936094-30936168)
chr7 (13-134)||(41381771-41381892)
chr7 (1-43)||(45458843-45458885)
chr7 (87-131)||(18990450-18990494)
chr7 (86-131)||(34118831-34118876)
chr7 (87-122)||(20438825-20438860)
chr7 (57-131)||(44963823-44963897)
chr7 (86-131)||(8770370-8770415)
chr7 (87-131)||(43750437-43750481)
[»] chr2 (17 HSPs)
chr2 (1-131)||(3383191-3383321)
chr2 (1-131)||(14532824-14532953)
chr2 (1-131)||(4673601-4673731)
chr2 (1-131)||(37083487-37083617)
chr2 (1-122)||(11813201-11813322)
chr2 (1-131)||(33423034-33423163)
chr2 (1-119)||(42427580-42427697)
chr2 (1-131)||(34665848-34665976)
chr2 (1-122)||(15771318-15771438)
chr2 (5-131)||(59199-59325)
chr2 (1-130)||(1353784-1353911)
chr2 (1-131)||(5389202-5389330)
chr2 (1-129)||(3810452-3810579)
chr2 (1-130)||(38963068-38963197)
chr2 (1-131)||(6884436-6884568)
chr2 (10-129)||(11227914-11228031)
chr2 (87-130)||(37909720-37909763)
[»] chr8 (24 HSPs)
chr8 (1-131)||(946246-946377)
chr8 (9-131)||(29229176-29229298)
chr8 (1-128)||(12162943-12163070)
chr8 (1-128)||(12407371-12407498)
chr8 (1-131)||(15725890-15726019)
chr8 (1-131)||(29459911-29460041)
chr8 (1-131)||(37511365-37511495)
chr8 (5-119)||(14498316-14498429)
chr8 (1-131)||(34332389-34332517)
chr8 (1-119)||(38502468-38502584)
chr8 (1-119)||(10280837-10280954)
chr8 (1-130)||(23286842-23286970)
chr8 (1-131)||(28090468-28090596)
chr8 (1-131)||(29773722-29773850)
chr8 (1-131)||(44935176-44935304)
chr8 (1-137)||(23274900-23275036)
chr8 (1-98)||(37161785-37161881)
chr8 (63-131)||(39170998-39171065)
chr8 (1-110)||(39171103-39171210)
chr8 (57-131)||(17642405-17642479)
chr8 (1-92)||(36002636-36002726)
chr8 (63-128)||(2273347-2273412)
chr8 (88-129)||(43485053-43485094)
chr8 (12-107)||(23275078-23275173)
[»] chr1 (34 HSPs)
chr1 (5-130)||(8461528-8461652)
chr1 (1-131)||(23061278-23061408)
chr1 (1-131)||(51985212-51985341)
chr1 (1-119)||(46770743-46770860)
chr1 (1-131)||(23056977-23057107)
chr1 (1-131)||(51369594-51369724)
chr1 (1-119)||(18642146-18642263)
chr1 (1-119)||(39971281-39971398)
chr1 (1-119)||(45423892-45424009)
chr1 (1-119)||(51520091-51520208)
chr1 (1-131)||(6519987-6520116)
chr1 (1-131)||(35305428-35305558)
chr1 (1-119)||(23459561-23459678)
chr1 (1-119)||(39190575-39190692)
chr1 (1-108)||(50905856-50905962)
chr1 (1-131)||(5956526-5956656)
chr1 (1-119)||(38262146-38262262)
chr1 (1-131)||(921842-921971)
chr1 (5-131)||(37499024-37499148)
chr1 (5-119)||(45673598-45673711)
chr1 (1-122)||(28494048-28494167)
chr1 (1-114)||(43306810-43306921)
chr1 (1-112)||(52303290-52303400)
chr1 (1-130)||(26102474-26102602)
chr1 (57-131)||(50239277-50239351)
chr1 (87-130)||(26010943-26010986)
chr1 (87-130)||(51977859-51977902)
chr1 (86-131)||(12178960-12179005)
chr1 (1-49)||(16482854-16482901)
chr1 (1-49)||(29106445-29106493)
chr1 (88-129)||(2247408-2247449)
chr1 (87-131)||(33910052-33910096)
chr1 (1-29)||(35242407-35242435)
chr1 (87-123)||(42316843-42316879)
[»] chr6 (13 HSPs)
chr6 (1-131)||(8401414-8401546)
chr6 (1-131)||(24213189-24213318)
chr6 (1-119)||(13390665-13390782)
chr6 (1-119)||(4110832-4110949)
chr6 (1-131)||(32833774-32833903)
chr6 (1-119)||(1096494-1096610)
chr6 (1-127)||(26358556-26358681)
chr6 (1-108)||(24487308-24487415)
chr6 (1-131)||(2259181-2259310)
chr6 (5-131)||(17545885-17546009)
chr6 (1-131)||(6848786-6848920)
chr6 (87-130)||(15383204-15383247)
chr6 (88-131)||(34195879-34195922)
[»] chr5 (25 HSPs)
chr5 (1-131)||(32467320-32467449)
chr5 (1-131)||(34302925-34303054)
chr5 (1-131)||(13410818-13410948)
chr5 (1-131)||(43237355-43237484)
chr5 (1-119)||(3056673-3056790)
chr5 (1-119)||(18228472-18228589)
chr5 (1-128)||(6561103-6561229)
chr5 (1-131)||(6532857-6532986)
chr5 (1-131)||(42917395-42917524)
chr5 (1-119)||(1661704-1661821)
chr5 (1-131)||(24098147-24098276)
chr5 (1-119)||(36338857-36338974)
chr5 (1-119)||(2414201-2414318)
chr5 (1-119)||(9535144-9535261)
chr5 (1-119)||(2141519-2141636)
chr5 (1-108)||(21605926-21606033)
chr5 (1-96)||(6113808-6113903)
chr5 (1-100)||(6318317-6318415)
chr5 (57-131)||(13091245-13091319)
chr5 (5-96)||(2029634-2029724)
chr5 (57-131)||(14967563-14967637)
chr5 (87-122)||(2318434-2318469)
chr5 (87-130)||(3425090-3425133)
chr5 (60-131)||(4039469-4039541)
chr5 (87-131)||(28332484-28332528)
[»] chr3 (28 HSPs)
chr3 (1-131)||(46959829-46959958)
chr3 (1-130)||(42067855-42067984)
chr3 (1-131)||(38785082-38785211)
chr3 (1-119)||(35171203-35171320)
chr3 (1-119)||(47948404-47948521)
chr3 (1-131)||(29786533-29786663)
chr3 (1-131)||(876222-876351)
chr3 (1-119)||(40650348-40650465)
chr3 (1-117)||(42848204-42848319)
chr3 (1-131)||(42363928-42364057)
chr3 (1-108)||(31309156-31309262)
chr3 (1-131)||(44365886-44366015)
chr3 (1-131)||(11140523-11140651)
chr3 (57-131)||(29347311-29347385)
chr3 (1-130)||(44670260-44670387)
chr3 (57-131)||(39629948-39630022)
chr3 (70-131)||(37492241-37492302)
chr3 (1-131)||(45636365-45636495)
chr3 (1-49)||(37492194-37492242)
chr3 (87-131)||(788473-788517)
chr3 (81-129)||(52082045-52082093)
chr3 (20-119)||(378615-378712)
chr3 (87-131)||(4663146-4663190)
chr3 (87-131)||(19547851-19547895)
chr3 (87-132)||(21288812-21288857)
chr3 (86-131)||(29806370-29806415)
chr3 (5-49)||(4660036-4660080)
chr3 (87-131)||(27647842-27647886)
[»] chr4 (29 HSPs)
chr4 (1-129)||(30343102-30343232)
chr4 (5-119)||(33075991-33076105)
chr4 (1-131)||(47302257-47302386)
chr4 (1-131)||(11109596-11109727)
chr4 (1-131)||(3716602-3716731)
chr4 (1-131)||(55722755-55722883)
chr4 (1-131)||(38836127-38836256)
chr4 (1-119)||(34280236-34280353)
chr4 (5-131)||(52592074-52592199)
chr4 (1-131)||(48578907-48579035)
chr4 (1-131)||(28037962-28038091)
chr4 (1-131)||(51435812-51435942)
chr4 (5-119)||(30539841-30539954)
chr4 (5-131)||(37518965-37519090)
chr4 (5-131)||(37523181-37523306)
chr4 (1-119)||(46041978-46042095)
chr4 (1-130)||(41759660-41759787)
chr4 (1-119)||(43137383-43137500)
chr4 (1-119)||(27539194-27539311)
chr4 (1-129)||(37855398-37855526)
chr4 (1-129)||(53388848-53388975)
chr4 (1-96)||(14802989-14803084)
chr4 (1-119)||(52589349-52589466)
chr4 (57-129)||(31908774-31908846)
chr4 (63-130)||(9858587-9858654)
chr4 (87-133)||(53695384-53695430)
chr4 (57-130)||(36091390-36091463)
chr4 (81-131)||(31681542-31681592)
chr4 (87-131)||(46215772-46215816)
[»] scaffold0077 (2 HSPs)
scaffold0077 (1-131)||(48287-48415)
scaffold0077 (85-131)||(58124-58170)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-96)||(36643-36738)
[»] scaffold0283 (1 HSPs)
scaffold0283 (1-131)||(6516-6644)
[»] scaffold0625 (1 HSPs)
scaffold0625 (87-131)||(6266-6310)
[»] scaffold0113 (1 HSPs)
scaffold0113 (87-131)||(29607-29651)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 132 - 355
Target Start/End: Complemental strand, 40515639 - 40515416
Alignment:
Q  132 cctaacaattttcttctttttatttgtaaaaatgcacaaccaatcctaaattttgatagatgccatgtggcacacaaatgcacaatttatacgcatcatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40515639 cctaacaattttcttctttttatttgtaaaaatgcacaaccaatcctaaattttgatagatgcaatgtggcacacaaatgcacaatttatacgcatcatg 40515540  T
Q  232 catgcatatttcgctttctctcttaatacctattaccaacgtatacatgatgcatcaagtcaacttaaaatgagctcaattaagttttctatacacattt 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40515539 catgcatatttcgctttctctcttaatacctattaccaacgtatacatgatgcatcaagtcaacttaaaatgagctcaattaagttttctatacacattt 40515440  T
Q  332 ttacatctatcatatactcctttg 355  Q
    ||||||||||||||||||||||||    
T  40515439 ttacatctatcatatactcctttg 40515416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30863070 - 30863186
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  30863070 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 30863168  T
Q  101 cgtaatttgcgggtgtac 118  Q
    |||||||| |||||||||    
T  30863169 cgtaatttacgggtgtac 30863186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 28327343 - 28327473
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||| |||||||||     
T  28327343 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagaggaccggtacag 28327442  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||| ||||||||    
T  28327443 cttaatttgcgggtgtaccgtagaagttccc 28327473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 42711207 - 42711335
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  42711207 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacac 42711304  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||| ||||||||| ||||||||    
T  42711305 cttaatttgcggatgtaccgtagaagttccc 42711335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 30623849 - 30623732
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||       ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  30623849 aatgatattttctaaaatatatatgtcaacaaacacttattttctttataaaaaa-tgatagttaatttataaaaattgtaagcgagagtatcggtacac 30623751  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    ||||||||  |||||||||    
T  30623750 cgtaatttatgggtgtacc 30623732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 38129514 - 38129397
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||||||||  ||| |||||||||||    
T  38129514 aatgatgttttctaaaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcaagaataccggtacac 38129416  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  38129415 cgtaatttacgggtgtacc 38129397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 41913220 - 41913096
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||    
T  41913220 atattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacacctta 41913123  T
Q  105 atttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| || ||||||||    
T  41913122 atttgcgggtgtaccatagaagttccc 41913096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 21699421 - 21699304
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       |||||||||||||||||||| |||||  ||||||| ||||||||    
T  21699421 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgataattaatttataaaaa-tgtaaacgagagtatcggtacac 21699323  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    | ||||||||| |||||||    
T  21699322 cttaatttgcgagtgtacc 21699304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1691120 - 1690996
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||||       ||||| |||||||| ||||||||||| |||||||||||||| ||    
T  1691120 aatgatattttctaaaatatat--gtcaacaaacacctattttcttcataaaaaa-tgatagttaatttaaaaaaattgtaaatgagagtaccggtatac 1691024  T
Q  101 cgtaatttgcgggtgtaccgtaaaagtt 128  Q
    | |||||| ||||||||| ||| |||||    
T  1691023 cataatttacgggtgtacggtagaagtt 1690996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 40942153 - 40942282
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||||| ||||  |||||       ||||| |||||||||||||| |||||| |||||||||||||||     
T  40942153 aatgatattttttaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaa-tgtaagcgagagtaccggtacat 40942251  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||| ||| |||||| || ||||||||    
T  40942252 cttaatttacggatgtaccatagaagttccc 40942282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 3910211 - 3910307
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacacc 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| |||||||||||||||||    
T  3910211 atattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacacc 3910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 45461660 - 45461731
Alignment:
Q  58 gataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 129  Q
    |||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  45461660 gatagttaaattataaaaattgtaagcgagagtaccggtacaccgtaatttgcaggtgtaccgtagaagttc 45461731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 27956617 - 27956691
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||    
T  27956617 tgatagttaatttataaaatttgtaagcgagagtaccggtacaccttaatttgcgggtgtaccatagaagttccc 27956691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 45857543 - 45857475
Alignment:
Q  63 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  45857543 ttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtaaaagttccc 45857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 30936168 - 30936094
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  30936168 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 30936094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 41381771 - 41381892
Alignment:
Q  13 taaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgg 112  Q
    ||||||||||||||||||||| ||| ||||||||          ||||| |||||||||||||||||||||  | ||||||||| |||  |||||| |||    
T  41381771 taaaatatatatgtcaacaaagacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcaaaagtaccggtgcacattaatttacgg 41381870  T
Q  113 gtgtaccgtaaaagttccccct 134  Q
    |||||||||| ||||| |||||    
T  41381871 gtgtaccgtagaagtttcccct 41381892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45458843 - 45458885
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccatttt 43  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  45458843 aatgatattttctaaaatatatatgtcaacaaacacctatttt 45458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 18990450 - 18990494
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  18990450 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 18990494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 34118831 - 34118876
Alignment:
Q  86 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||||    
T  34118831 agagtaccagtacaccttaatttgcgggtgtaccgtagaagttccc 34118876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 20438860 - 20438825
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgta 122  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20438860 gagtaccggtacaccttaatttgcgggtgtaccgta 20438825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 44963897 - 44963823
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| ||| ||| ||||||||| || ||||||||    
T  44963897 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaaattgtgggtgtaccatagaagttccc 44963823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 8770415 - 8770370
Alignment:
Q  86 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||| ||||||||| |||||||||||||||||||| ||| ||||    
T  8770415 agagtatcggtacaccttaatttgcgggtgtaccgtataagatccc 8770370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 43750437 - 43750481
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||    
T  43750437 gagtaccggtacaccttaatttgcaggtgtcccgtagaagttccc 43750481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 3383321 - 3383191
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||    
T  3383321 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacac 3383222  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||| ||| ||||||||| ||||||||    
T  3383221 cgtaatttacggatgtaccgtagaagttccc 3383191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 14532953 - 14532824
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||       ||||| |||| |||||||||||||||| ||||||| || |||||    
T  14532953 aatgatattttctaaaatatatatgttaacaaacacctattttcttcataaaaaa-tgatagttaaattataaaaattgtaagcgagagtatcgatacac 14532855  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||||||||||||| ||||||||    
T  14532854 cgtaatttgcgggtgtaccgtagaagttccc 14532824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 4673731 - 4673601
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  4673731 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 4673632  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||| |||||||| || ||||||||    
T  4673631 cttaatttgcaggtgtaccttagaagttccc 4673601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37083487 - 37083617
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| |||||||||| |||||    
T  37083487 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccgatacac 37083586  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||| ||||||||| ||||||||    
T  37083587 cttaatttgcggatgtaccgtagaagttccc 37083617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11813322 - 11813201
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  11813322 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 11813223  T
Q  101 cgtaatttgcgggtgtaccgta 122  Q
    | ||||||| ||||||||||||    
T  11813222 cttaatttgtgggtgtaccgta 11813201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 33423163 - 33423034
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| |||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  33423163 aatgatattttttaaaatatatatgtcaacaaacagctatttttttcattaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 33423065  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||| ||||  ||||||||||||    
T  33423064 cgtaatttgcggatgtatagtaaaagttccc 33423034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 42427697 - 42427580
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||||||||  |||||| ||||||||    
T  42427697 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattgtaagcaagagtatcggtacac 42427599  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  42427598 cgtaatttacgggtgtacc 42427580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34665848 - 34665976
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       | ||| ||||||||||||||| ||||| ||||||||||||||||    
T  34665848 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-taatagttaatttataaaaat-gtaagcgagagtaccggtacac 34665945  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||| ||||||||    
T  34665946 cttaatttgcgggtgtaccgtagaagttccc 34665976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 15771438 - 15771318
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||       ||||| |||||||||||||||| |||| ||||||||||||||||    
T  15771438 aatgatattttctaaaatatatatgtcaacaaacacttattttctttataaaaaa-tgatagttaatttataaaaattataagcgagagtaccggtacac 15771340  T
Q  101 cgtaatttgcgggtgtaccgta 122  Q
    | |||||| |||||||||||||    
T  15771339 cttaatttacgggtgtaccgta 15771318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 59199 - 59325
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgt- 103  Q
    ||||||||||||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||||||||||| | |     
T  59199 atattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcgagagtaccggtacatcata 59297  T
Q  104 aatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||| ||||||||||| ||||||||    
T  59298 aatttgcaggtgtaccgtagaagttccc 59325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 1353784 - 1353911
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       | ||| ||||||||||||||| ||||| |||||||| |||||||    
T  1353784 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaatt-atagttaatttataaaaat-gtaagcgagagtactggtacac 1353881  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    | |||||||||||||||||||| |||||||    
T  1353882 cttaatttgcgggtgtaccgtagaagttcc 1353911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 5389330 - 5389202
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||  |||||       ||||| ||||||||||||||| ||||| |||||| |||||||||    
T  5389330 aatgatattttctaaaatatatatgtcaacaaacacatatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtgccggtacac 5389233  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||| ||||||||    
T  5389232 cttaatttgcgggtgtaccgtagaagttccc 5389202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 3810579 - 3810452
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||       | ||| ||||||||||||||||||||| || |||||||||||||    
T  3810579 aatgatattttctaaaatatatatgtcaaaaaacacctattttcttcat-aaaaaataatagttaatttataaaaattgtaagcgaaagtaccggtacac 3810481  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttc 129  Q
    | ||||||| ||||||  |||| ||||||    
T  3810480 cttaatttgtgggtgtgtcgtagaagttc 3810452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 38963197 - 38963068
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnn-tgataattaatttataaaaattgtaagtgagagtaccggtaca 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||  || ||        ||||| ||||||||||||||| ||||| |||||||||||| ||    
T  38963197 aatgatattttctaaaatatatatgtcaacaaacacctatttcttttataaaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtgca 38963099  T
Q  100 ccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    || |||||||| |||||| |||| |||||||    
T  38963098 ccttaatttgcaggtgtaacgtagaagttcc 38963068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6884436 - 6884568
Alignment:
Q  1 aatgatattttctaaaatatatatgt--caacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtac 98  Q
    ||||||||||||| |||||||||| |  ||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||    
T  6884436 aatgatattttcttaaatatatatatatcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtac 6884535  T
Q  99 accgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||| |||||| |   ||||||||||||||||||    
T  6884536 accttaatttacaaatgtaccgtaaaagttccc 6884568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 11227914 - 11228031
Alignment:
Q  10 ttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttg 109  Q
    |||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| |||||||| | |||||| |||||||    
T  11227914 ttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtactgatacaccttaatttg 11228011  T
Q  110 cgggtgtaccgtaaaagttc 129  Q
    | ||||||||||| ||||||    
T  11228012 caggtgtaccgtagaagttc 11228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 37909720 - 37909763
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  37909720 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 37909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 946246 - 946377
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnn-tgataattaatttataaaaattgtaagtgagagtaccggtaca 99  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||        ||||| |||||||||||||||||||||||||||||||||||||    
T  946246 aatgatattttctaaaatatatatgtcaacaaacacttattttcttcataaaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtaca 946345  T
Q  100 ccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||||||||||| ||||||||    
T  946346 ccgtaatttgcgggtgtaccgtagaagttccc 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 29229298 - 29229176
Alignment:
Q  9 tttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaattt 108  Q
    ||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29229298 tttctaaaatatatatgtcaacaaacacctattttcttcataaaaaagtgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaattt 29229199  T
Q  109 gcgggtgtaccgtaaaagttccc 131  Q
     ||||||||||||| ||| ||||    
T  29229198 acgggtgtaccgtagaagatccc 29229176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12163070 - 12162943
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||       ||||| ||||||||||||||||||||||||||||||||||||||    
T  12163070 aatgatattttctaaaatatatctgtcaacaaacacctattttctacataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacac 12162971  T
Q  101 cgtaatttgcgggtgtaccgtaaaagtt 128  Q
     ||||||||||||| ||||||| |||||    
T  12162970 tgtaatttgcgggtataccgtataagtt 12162943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12407498 - 12407371
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||       ||||| ||||||||||||||||||||||||||||||||||||||    
T  12407498 aatgatattttctaaaatatatctgtcaacaaacacctattttctacataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacac 12407399  T
Q  101 cgtaatttgcgggtgtaccgtaaaagtt 128  Q
     ||||||||||||| ||||||| |||||    
T  12407398 tgtaatttgcgggtataccgtataagtt 12407371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 15726019 - 15725890
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||| ||||||||    
T  15726019 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcgagagtatcggtacac 15725921  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| ||||||||||| ||||||||    
T  15725920 cgtaatttgcaggtgtaccgtagaagttccc 15725890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 29459911 - 29460041
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  29459911 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 29460010  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||| ||||||||||| ||||||||    
T  29460011 cttaatttgcaggtgtaccgtagaagttccc 29460041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37511365 - 37511495
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |        ||||| ||||||||||||||||||||| ||||||||||||||||    
T  37511365 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttaataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 37511464  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||| ||| ||||||||| ||||||||    
T  37511465 cttaatttacggatgtaccgtagaagttccc 37511495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 14498429 - 14498316
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  14498429 atattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtagaccgta 14498331  T
Q  105 atttgcgggtgtacc 119  Q
    |||| ||||||||||    
T  14498330 atttacgggtgtacc 14498316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34332389 - 34332517
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  34332389 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacac 34332486  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||| ||||||||    
T  34332487 cttaatttgcgggtgtaccgtagaagttccc 34332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 38502468 - 38502584
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||| ||||| |||||    
T  38502468 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat--aaaaatgatagttaatttataaaaattgtaagcgagaataccgatacac 38502565  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  38502566 cgtaatttacgggtgtacc 38502584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10280837 - 10280954
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||| |||  |||||||||| |||||    
T  10280837 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgataattaatttataaaaattataaacgagagtaccgatacac 10280935  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||  ||||||||||    
T  10280936 cgtaattcacgggtgtacc 10280954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 23286842 - 23286970
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||| |||| ||||||  ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  23286842 aatgatattttctaaaatatatatttcaataaacacttatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacac 23286940  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    | |||||||||||||||||||| |||||||    
T  23286941 cttaatttgcgggtgtaccgtagaagttcc 23286970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 28090468 - 28090596
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||| | ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  28090468 aatgatattttctaaaatatatatgtcaacaaacatctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacac 28090565  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||| |||||||||||||||| ||||||||    
T  28090566 cttaaattgcgggtgtaccgtagaagttccc 28090596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 29773722 - 29773850
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| || |||||||||||||    
T  29773722 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgaaagtaccggtacac 29773819  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||| |||||||||||||||| ||||||||    
T  29773820 cttaaattgcgggtgtaccgtagaagttccc 29773850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 44935176 - 44935304
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||  ||||||||||||||||    
T  44935176 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaaccgagagtaccggtacac 44935273  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||| |||||||||||||||| ||||||||    
T  44935274 cttaaattgcgggtgtaccgtagaagttccc 44935304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 23274900 - 23275036
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtacc-ggtaca 99  Q
    ||||||||||||||||||  ||||||||| ||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||||| ||||||    
T  23274900 aatgatattttctaaaatgcatatgtcaaaaaacacctattttcttcataaaaaa-taatagttaatttataaaaattgtaagcgagagtacccggtaca 23274998  T
Q  100 ccgtaatttgcgggtgtaccgtaaaagttccccctaac 137  Q
    || ||||||||||||||| |||| |||||||| |||||    
T  23274999 ccttaatttgcgggtgtatcgtagaagttcccactaac 23275036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 37161785 - 37161881
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtac 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       | ||| |||||||||||||||| |||| |||||||| |||||    
T  37161785 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattataagcgagagtactggtac 37161881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 39171065 - 39170998
Alignment:
Q  63 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  39171065 ttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 39170998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39171210 - 39171103
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  || ||       ||||| |||||||||||||| |||||| |||||||| |||||||    
T  39171210 aatgatattttctaaaatatatatgtcaacaaacacctatttcttttat-aaaaaatgatagttaatttataaaaa-tgtaagcgagagtactggtacac 39171113  T
Q  101 cgtaatttgc 110  Q
    | ||||||||    
T  39171112 cttaatttgc 39171103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 17642405 - 17642479
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  17642405 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 17642479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 36002636 - 36002726
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtac 92  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||  ||||||||    
T  36002636 aatgatattttctaaaatagatatgtcaacaaacacctattttcttcat-aaaaaataatagttaatttataaaaattgtaaacgagagtac 36002726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 2273347 - 2273412
Alignment:
Q  63 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagtt 128  Q
    ||||||||||||  ||  |||| |||||||||||||||| |||||||| ||||||||||| |||||    
T  2273347 ttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcaggtgtaccgtagaagtt 2273412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 43485094 - 43485053
Alignment:
Q  88 agtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 129  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  43485094 agtaccggtacaccttaatttgcgggtgtaccgtagaagttc 43485053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 23275078 - 23275173
Alignment:
Q  12 ctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagta-ccggtacaccgtaatt 107  Q
    |||||||  ||||||||| ||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||| |||||||||| |||||    
T  23275078 ctaaaatgcatatgtcaaaaaacacctattttcttcataaaaaa-taatagttaatttataaaaattgtaagcgagagtacccggtacaccttaatt 23275173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 8461652 - 8461528
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8461652 atattttctaaaatatatatgtcaacaaacaccaattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtacaccgta 8461554  T
Q  105 atttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||||||||| || |||||||    
T  8461553 atttgcgggtgtaccatagaagttcc 8461528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 23061278 - 23061408
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||| ||||||||||||||||    
T  23061278 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgataattaatttataaaaattgtaagcgagagtaccggtacac 23061377  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||| ||||||||    
T  23061378 cttaatttgcgggtgtaccgtagaagttccc 23061408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 51985212 - 51985341
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||||||||||||    
T  51985212 aatgatattttctaaaatatatttgtcaacaaacacctattttcttcataaagaatt-atagttaatttataaaaattgtaagcgagagtaccggtacac 51985310  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| ||||||||||| ||||||||    
T  51985311 cgtaatttgcaggtgtaccgtagaagttccc 51985341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 46770860 - 46770743
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||| ||    
T  46770860 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtagac 46770762  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  46770761 cgtaatttacgggtgtacc 46770743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 23056977 - 23057107
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||| ||||||||||    
T  23056977 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagaggaccggtacac 23057076  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||| ||||||||    
T  23057077 cttaatttgcgggtgtaccgtagaagttccc 23057107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 51369594 - 51369724
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          | ||| ||||||||||||||||||||| ||||||||||||||||    
T  51369594 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaataatagttaatttataaaaattgtaagcgagagtaccggtacac 51369693  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||| ||||||||||||||||||||    
T  51369694 cttaatttgcaggtgtaccgtaaaagttccc 51369724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 18642146 - 18642263
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  18642146 aatgatattttctaaaatatatatgtcaacaaacacctatttttttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 18642244  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  18642245 cgtaatttacgggtgtacc 18642263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39971398 - 39971281
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  39971398 aatgatattttctaaaatatatatgtcaacaaaaacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 39971300  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  39971299 cgtaatttacgggtgtacc 39971281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 45423892 - 45424009
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||     
T  45423892 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacat 45423990  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  45423991 cgtaatttacgggtgtacc 45424009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 51520091 - 51520208
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||| |||||||||||||||||| |    
T  51520091 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgaaagtgagagtaccggtaccc 51520189  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  51520190 cgtaatttacgggtgtacc 51520208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 6520116 - 6519987
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  6520116 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 6520017  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||| ||||||||||| ||||||||    
T  6520016 cttaatttgc-ggtgtaccgtagaagttccc 6519987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 35305428 - 35305558
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  35305428 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 35305527  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||| || |||||||||| ||||||||    
T  35305528 cttaatttacgagtgtaccgtagaagttccc 35305558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 23459678 - 23459561
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| |||||||| |||||||    
T  23459678 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattataagcgagagtactggtacac 23459580  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  23459579 cgtaatttacgggtgtacc 23459561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39190692 - 39190575
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| ||||||||||||||||    
T  39190692 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattataagcgagagtaccggtacac 39190594  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| | ||||||||    
T  39190593 cgtaatttactggtgtacc 39190575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 50905856 - 50905962
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||||||||||||    
T  50905856 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatt-atatttaatttataaaaattgtaagcgagagtaccggtacac 50905954  T
Q  101 cgtaattt 108  Q
    ||||||||    
T  50905955 cgtaattt 50905962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 5956656 - 5956526
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| |||||||||||||||| |||| |||||||||||||||     
T  5956656 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattataagcgagagtaccggtacag 5956557  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||||||| |||||||||||| ||||||||    
T  5956556 cttaatttgtgggtgtaccgtagaagttccc 5956526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 38262262 - 38262146
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||| ||||||| || |||||    
T  38262262 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgataattaatttataaaaattgtaagcgagagta-cgatacac 38262165  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||| | ||||||||||    
T  38262164 cgtaatctacgggtgtacc 38262146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 921971 - 921842
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||  ||||||||||||||||    
T  921971 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaac-gagagtaccggtacac 921873  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||| |||||||| || ||||||||    
T  921872 cttaatttgcaggtgtaccatagaagttccc 921842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 37499024 - 37499148
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||    
T  37499024 atattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacacctta 37499121  T
Q  105 atttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| || ||||||||    
T  37499122 atttgcgggtgtaccatagaagttccc 37499148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 45673598 - 45673711
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    |||||||||||||||||| |||||||||||||| |||||||||||       ||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  45673598 atattttctaaaatatatttgtcaacaaacacctattttcttcataaaaaa-tgatagttaacttataaaaattgtaagcgagagtaccggtacaccgta 45673696  T
Q  105 atttgcgggtgtacc 119  Q
    |||| ||| ||||||    
T  45673697 atttacggatgtacc 45673711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28494048 - 28494167
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| |||||  |||||||||||||||    
T  28494048 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcaagagtaccggtacac 28494145  T
Q  101 cgtaatttgcgggtgtaccgta 122  Q
    | ||||||||||||||||||||    
T  28494146 cttaatttgcgggtgtaccgta 28494167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 43306810 - 43306921
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||       | ||| ||||||||||||||||||||  ||||||||||||||||    
T  43306810 aatgatattttctaaaatatatatgtcaacaaacgcctattttcttcat--aaaaattatagttaatttataaaaattgtaaacgagagtaccggtacac 43306907  T
Q  101 cgtaatttgcgggt 114  Q
    |||||||| |||||    
T  43306908 cgtaatttacgggt 43306921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 52303290 - 52303400
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| |||||||||||||| |||||||||||||||||||||||    
T  52303290 aatgatattttctaaaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaa-tgtaagtgagagtaccggtacac 52303388  T
Q  101 cgtaatttgcgg 112  Q
    | ||||||||||    
T  52303389 cttaatttgcgg 52303400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 26102602 - 26102474
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||       | ||| ||||||||||||||| |||| ||||| || ||||||||    
T  26102602 aatgatattttctaaaatatatatgtcaagaaacacctattttcttcataaaaaatt-atagttaatttataaaaatcgtaaatgagaatatcggtacac 26102504  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||   ||||||||||| |||||||    
T  26102503 cgtaatttagaggtgtaccgtagaagttcc 26102474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 50239351 - 50239277
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  50239351 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 50239277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 26010986 - 26010943
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  26010986 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 26010943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 51977902 - 51977859
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  51977902 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 51977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 12178960 - 12179005
Alignment:
Q  86 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||    
T  12178960 agagtaccggtacacctcaatttgcgagtgtaccgtaaaagttccc 12179005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16482854 - 16482901
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcat 49  Q
    |||||||||||||||| | |||||||||||||||||| |||||||||||    
T  16482854 aatgatattttctaaa-tctatatgtcaacaaacacctattttcttcat 16482901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29106493 - 29106445
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcat 49  Q
    ||||||||||||||||||||| || |||||||||||  |||||||||||    
T  29106493 aatgatattttctaaaatatacatatcaacaaacacatattttcttcat 29106445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 2247408 - 2247449
Alignment:
Q  88 agtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 129  Q
    |||||||||||||| ||||||| |||||||||||| ||||||    
T  2247408 agtaccggtacaccttaatttgtgggtgtaccgtagaagttc 2247449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 33910052 - 33910096
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| ||||||| |||||||||||| || |||||    
T  33910052 gagtaccggtacaccttaatttgtgggtgtaccgtagaaattccc 33910096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35242435 - 35242407
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaa 29  Q
    |||||||||||||||||||||||||||||    
T  35242435 aatgatattttctaaaatatatatgtcaa 35242407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 42316879 - 42316843
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaa 123  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  42316879 gagtaccggtacaccttaatttgcgggtgtactgtaa 42316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 8401546 - 8401414
Alignment:
Q  1 aatgatattttctaaaatatatat--gtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtac 98  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||| ||||||    
T  8401546 aatgatattttctaaaatatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtagcggtac 8401447  T
Q  99 accgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||||||||||||||| || |||||    
T  8401446 accgtaatttgcgggtgtaccgtagaaattccc 8401414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 24213189 - 24213318
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||||||||||| ||||||| || ||    
T  24213189 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgaaagtaccgatatac 24213287  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||||||||||||| || |||||    
T  24213288 cgtaatttgcgggtgtaccgtagaaattccc 24213318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 13390665 - 13390782
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  13390665 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 13390763  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| | ||||||||    
T  13390764 cgtaatttacaggtgtacc 13390782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 4110832 - 4110949
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||| ||||||||||    
T  4110832 aatgatattttcgaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagaaccggtacac 4110930  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  4110931 cgtaatttacgggtgtacc 4110949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 32833903 - 32833774
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||| | ||||  |||||||||||       ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  32833903 aatgatattttctaaaatatatatgtcaatagacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccagtacac 32833805  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||| ||||||||| ||||||||    
T  32833804 cgtaatttgcggatgtaccgtagaagttccc 32833774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 1096494 - 1096610
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||       | ||| |||||||||||||||| |||| ||||||||||||||||    
T  1096494 aatgatattttctaaaatatatatgtcaacaaacacctattttcctcataaaaa--ttatagttaatttataaaaattataagcgagagtaccggtacac 1096591  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  1096592 cgtaatttacgggtgtacc 1096610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26358681 - 26358556
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||| |||| |||||||| |||||||    
T  26358681 aatgatattttttaaaatatatatgtcaacaaacacgtattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtactggtacac 26358583  T
Q  101 cgtaatttgcgggtgtaccgtaaaagt 127  Q
    | |||||| ||| |||||| |||||||    
T  26358582 cataatttacggttgtaccataaaagt 26358556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 24487415 - 24487308
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| |||| |||||||||||||||| ||||||||||||||||    
T  24487415 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaacttataaaaattgtaagcgagagtaccggtacac 24487316  T
Q  101 cgtaattt 108  Q
    | ||||||    
T  24487315 cttaattt 24487308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2259181 - 2259310
Alignment:
Q  1 aatgatatt-ttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtaca 99  Q
    ||||||||| || ||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||| |||||    
T  2259181 aatgatattattttaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtacctgtaca 2259278  T
Q  100 ccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    || |||||||||||||||||||| ||||||||    
T  2259279 ccttaatttgcgggtgtaccgtagaagttccc 2259310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 17545885 - 17546009
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||| ||||||| ||    
T  17545885 atattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccagtacacctta 17545982  T
Q  105 atttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||  || ||||||||    
T  17545983 atttgcgggtgtactatagaagttccc 17546009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6848786 - 6848920
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnn-----tgataattaatttataaaaattgtaagtgagagtaccgg 95  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |            ||||| ||||||||||||||| ||||| |||||||||||    
T  6848786 aatgatattttctaaaatatatatgtcaacaaacacctattttttttttttttataaaaaatgatagttaatttataaaaat-gtaagcgagagtaccgg 6848884  T
Q  96 tacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||| |||||| ||||||||||||| ||||||||    
T  6848885 tacaccttaatttacgggtgtaccgtagaagttccc 6848920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 15383247 - 15383204
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  15383247 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 15383204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 34195922 - 34195879
Alignment:
Q  88 agtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||    
T  34195922 agtaccggtacaccttaatttgcggatgtaccgtagaagttccc 34195879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 32467320 - 32467449
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||| ||| ||||||||||||||||    
T  32467320 aatgatattttctgaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgcaagcgagagtaccggtacac 32467418  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||||||||||||| ||||||||    
T  32467419 cgtaatttgcgggtgtaccgtagaagttccc 32467449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34302925 - 34303054
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||       | ||| |||||||||||||||| |||||||||||||||||||||    
T  34302925 aatgatattttctaaaatatatatgtcaacaaacacctatttttttcataaaaaatt-atagttaatttataaaaattataagtgagagtaccggtacac 34303023  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| ||||||||||| ||||||||    
T  34303024 cgtaatttgcaggtgtaccgtagaagttccc 34303054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13410818 - 13410948
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  13410818 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 13410917  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||| ||||||||| ||||||||    
T  13410918 cttaatttgcggatgtaccgtagaagttccc 13410948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 43237484 - 43237355
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||       | ||||||||||||||||||||||||| |||||||||| |||||    
T  43237484 aatgatattttctaaaatatatatgtcaaccaacacctattttcttcataaaaaatt-ataattaatttataaaaattgtaagcgagagtaccgatacac 43237386  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| |||||||| || ||||||||    
T  43237385 cgtaatttgcaggtgtaccatagaagttccc 43237355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3056673 - 3056790
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  3056673 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 3056771  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| || |||||||    
T  3056772 cgtaatttacgagtgtacc 3056790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18228589 - 18228472
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||       ||||| ||||||||||||||||||||||||||||||||||| ||    
T  18228589 aatgatattttctaaaatatatatgtcaacaaacacgtattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtagac 18228491  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  18228490 cgtaatttacgggtgtacc 18228472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 6561103 - 6561229
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       | ||| |||||||||||||||||||||  ||| |||||||||||    
T  6561103 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcaagaataccggtacac 6561201  T
Q  101 cgtaatttgcgggtgtaccgtaaaagtt 128  Q
    |||||||||| ||||||||||| |||||    
T  6561202 cgtaatttgcaggtgtaccgtagaagtt 6561229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6532857 - 6532986
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||       ||||| |||| |||||||||||||||| ||||||| || |||||    
T  6532857 aatgatattttctaaaatatatatgttaacaaacacctattttcttcataaaaca-tgatagttaaattataaaaattgtaagcgagagtatcgatacac 6532955  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||| ||||| ||||||||||||    
T  6532956 cgtaatttgcggatgtacagtaaaagttccc 6532986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 42917395 - 42917524
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  42917395 aatgatattttctaaaatatatatttcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacac 42917493  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||||||| ||||||||| |||||||||||    
T  42917494 cttaatttgtgggtgtaccataaaagttccc 42917524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1661821 - 1661704
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||       ||||| ||||||||||||||||||||| ||||| ||||||||||    
T  1661821 aatgatattttctaaaatatatatgtcaacaaacacctatttttttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagcaccggtacac 1661723  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| | ||||||||    
T  1661722 cgtaatttacaggtgtacc 1661704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 24098147 - 24098276
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||       ||||| || |||||||||||||||||| ||||||||| ||||||    
T  24098147 aatgatattttctaaaatatatatgtcaacaaagacttattttcttcataaaaaa-tgatattttatttataaaaattgtaagcgagagtaccagtacac 24098245  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| ||||||| ||| ||||||||    
T  24098246 cgtaatttgcaggtgtactgtagaagttccc 24098276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 36338974 - 36338857
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||| |||||||| ||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||| |||||||    
T  36338974 aatgatattttccaaaatatacatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtactggtacac 36338876  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  36338875 cgtaatttacgggtgtacc 36338857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 2414201 - 2414318
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||||||||||||||||||| |||||    
T  2414201 aatgatgttttctaaaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccgttacac 2414299  T
Q  101 cgtaatttgcgggtgtacc 119  Q
     ||||||| ||| ||||||    
T  2414300 tgtaatttacggatgtacc 2414318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9535144 - 9535261
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||| |||||||||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||||||||||||||||||| |||||    
T  9535144 aatgatgttttctaaaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccgttacac 9535242  T
Q  101 cgtaatttgcgggtgtacc 119  Q
      |||||| ||||||||||    
T  9535243 tttaatttacgggtgtacc 9535261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 2141519 - 2141636
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||| ||||||||||||||||| |||||||||||  |||||||||||       ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  2141519 aatgatgttttctaaaatatatatatcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaacggtacac 2141617  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    ||||||||  |||||||||    
T  2141618 cgtaatttatgggtgtacc 2141636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 21605926 - 21606033
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| |||| |||||||||||||||| ||||||||||||||||    
T  21605926 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaacttataaaaattgtaagcgagagtaccggtacac 21606025  T
Q  101 cgtaattt 108  Q
    | ||||||    
T  21606026 cttaattt 21606033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6113903 - 6113808
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggt 96  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| |||||||||||||||| |||| ||||||||||||    
T  6113903 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattataagcgagagtaccggt 6113808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6318415 - 6318317
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| |       | ||| ||||||||||||||||||||| |||||||||| |||||    
T  6318415 aatgatattttctaaaatatatatgtcaacaaatacctattttcttcgtaaaaaatt-atagttaatttataaaaattgtaagcgagagtaccgctacac 6318317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 13091245 - 13091319
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||| ||||||||||||| ||||||||    
T  13091245 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttacgggtgtaccgtagaagttccc 13091319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 2029634 - 2029724
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggt 96  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||       ||| | |||| |||||||||||||||| ||||||| ||||    
T  2029634 atattttctaaaatatataagtcaacaaacacctattttcttcat-aaaaaatgacagttaaattataaaaattgtaagcgagagtatcggt 2029724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 14967563 - 14967637
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||  ||  |||| ||||||||| |||||| |||||||| ||||||||||| ||||||||    
T  14967563 tgatagttaatttataaatttttgaagtaagagtaccgatacaccttaatttgcaggtgtaccgtagaagttccc 14967637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 2318469 - 2318434
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgta 122  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2318469 gagtaccggtacaccttaatttgcgggtgtaccgta 2318434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 3425133 - 3425090
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||||||||  |||||||||||||||||||| |||||||    
T  3425133 gagtaccggtacactttaatttgcgggtgtaccgtagaagttcc 3425090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 4039541 - 4039469
Alignment:
Q  60 taattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcg-ggtgtaccgtaaaagttccc 131  Q
    |||||||||||||||  |   |||| |||||||||||||||| ||||||| | ||||||||||| ||||||||    
T  4039541 taattaatttataaatttatgaagtaagagtaccggtacaccttaatttgtgaggtgtaccgtagaagttccc 4039469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 28332484 - 28332528
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| ||||||||  |||||||||| ||||||||    
T  28332484 gagtaccggtacaccttaatttgcaagtgtaccgtagaagttccc 28332528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 46959829 - 46959958
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||| ||||||| |||||||||| |||||    
T  46959829 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaagttgtaagcgagagtaccgatacac 46959927  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| ||||||||||||||||||||    
T  46959928 cgtaatttgcaggtgtaccgtaaaagttccc 46959958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 42067855 - 42067984
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  42067855 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 42067954  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    | |||||||||||||||||||| |||||||    
T  42067955 cttaatttgcgggtgtaccgtagaagttcc 42067984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 38785211 - 38785082
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaa-ttgtaagtgagagtaccggtaca 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       | ||| |||||||||||||| ||||||| |||||||||||||||    
T  38785211 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaa--ttatagttaatttataaaaaattgtaagcgagagtaccggtaca 38785114  T
Q  100 ccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||| ||||||||||| ||||||||    
T  38785113 ccgtaatttgcaggtgtaccgtagaagttccc 38785082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 35171320 - 35171203
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| ||||||||||||||||    
T  35171320 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtaccggtacac 35171222  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| ||||||||||    
T  35171221 cgtaatttacgggtgtacc 35171203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 47948521 - 47948404
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  47948521 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 47948423  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    ||| |||| ||||||||||    
T  47948422 cgtcatttacgggtgtacc 47948404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 29786663 - 29786533
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||    
T  29786663 aatgatattttctaaaatatatatgtcaacaaacacttattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacac 29786564  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||| ||||||||||| ||||||||    
T  29786563 cttaatttgcaggtgtaccgtagaagttccc 29786533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 876351 - 876222
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||       ||||| |||| ||||||||||| |||| ||||||||| |||||     
T  876351 aatgatattttctaaaatatatatgtcaacaaacaactattttcttcataaaaaa-tgatagttaaattataaaaattataagcgagagtaccagtacat 876253  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||||||||||||||| ||||||||    
T  876252 cgtaatttgcgggtgtaccgtagaagttccc 876222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 40650348 - 40650465
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||| |||||    
T  40650348 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattgtaagcgagagtaccgatacac 40650446  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| || |||||||    
T  40650447 cgtaatttacgagtgtacc 40650465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 42848319 - 42848204
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| | ||||||||||||||    
T  42848319 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattgtaagcgggagtaccggtacac 42848221  T
Q  101 cgtaatttgcgggtgta 117  Q
    ||| |||| ||||||||    
T  42848220 cgtcatttacgggtgta 42848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 42364057 - 42363928
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||       | ||| |||| ||||||||||||||||  ||||||||| |||||    
T  42364057 aatgatattttctaaaatatatatgtcaacaaacacctatttttttcataaaaaatt-atagttaaattataaaaattgtaagctagagtaccgatacac 42363959  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| ||||||||||| ||||||||    
T  42363958 cgtaatttgcaggtgtaccgtagaagttccc 42363928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31309156 - 31309262
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||  ||||||||||||||||    
T  31309156 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaaccgagagtaccggtacac 31309254  T
Q  101 cgtaattt 108  Q
    ||||||||    
T  31309255 cgtaattt 31309262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 44365886 - 44366015
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  44365886 aatgatattttttaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacac 44365984  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||| |||||||||| || ||||||||    
T  44365985 cttaatttacgggtgtaccatagaagttccc 44366015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 11140523 - 11140651
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  || ||       ||||| ||  ||||||||||| ||||| ||||||||||||||||    
T  11140523 aatgatattttctaaaatatatatgtcaacaaacacctatttcttttataaaaaa-tgatagtttgtttataaaaat-gtaagcgagagtaccggtacac 11140620  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||| ||||||||    
T  11140621 cttaatttgcgggtgtaccgtagaagttccc 11140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 29347385 - 29347311
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||||||||    
T  29347385 tgatagttaatttataaaaattgtaagcgagagtaccggtacactgcaatttgcgggtgtaccgtagaagttccc 29347311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 44670387 - 44670260
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||  |||||       ||||| |||||||||||||| |||||| || |||||||| ||||    
T  44670387 aatgatattttctaaaatatatatgtcaacaaacacttatttctttcat-aaaaaatgatagttaatttataaaaa-tgtaagcgaaagtaccggcacac 44670290  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    | |||||| ||| ||||||||| |||||||    
T  44670289 cttaatttacggatgtaccgtagaagttcc 44670260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 39630022 - 39629948
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| ||||||||||||||||||||| || |||||||||||| | |||||||||| ||||||||| ||||||||    
T  39630022 tgatagttaatttataaaaattgtaagcgatagtaccggtacatcttaatttgcggatgtaccgtagaagttccc 39629948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 37492241 - 37492302
Alignment:
Q  70 ataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  37492241 ataaaaattataagcgagagtaccggtacaccgtaatttgcggatgtaccgtagaagttccc 37492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 45636365 - 45636495
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||          ||||| |||||||||||||||| |||| ||| ||||| ||| |     
T  45636365 aatgatattttctaaaatatatatgtcaacaaatacctattttctttcataaaaaatgatagttaatttataaaaattataagcgagtgtaccagtatat 45636464  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
      |||||| || |||||||||| ||||||||    
T  45636465 tttaatttacgagtgtaccgtagaagttccc 45636495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37492194 - 37492242
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcat 49  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  37492194 aatgatattttttaaaatatatatgtcaacaaacacctattttcttcat 37492242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 788517 - 788473
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  788517 gagtaccggtacaccttaatttgcgggtgtaccgtaaaaattccc 788473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 52082093 - 52082045
Alignment:
Q  81 aagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 129  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  52082093 aagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttc 52082045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 378712 - 378615
Alignment:
Q  20 tatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtacc 119  Q
    |||||||||||||||||  |||||||||||       ||||| ||||||||||||||||  ||||||  |||||||||||| ||||||| ||||||||||    
T  378712 tatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaatta-aagtgatggtaccggtacactgtaatttacgggtgtacc 378615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 4663190 - 4663146
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||    
T  4663190 gagtaccggtacaccttaatttgcggatgtaccgtagaagttccc 4663146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 19547851 - 19547895
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||    
T  19547851 gagtaccggtacaccttaatttgtgggtgtaccgtagaagttccc 19547895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 21288857 - 21288812
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcccc 132  Q
    |||||||| |||||| |||||||||||||||||||| || ||||||    
T  21288857 gagtaccgatacaccttaatttgcgggtgtaccgtagaaattcccc 21288812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 29806370 - 29806415
Alignment:
Q  86 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||||  |||||||| |||||||||| ||||||||    
T  29806370 agagtaccggtacacctcaatttgcgagtgtaccgtagaagttccc 29806415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4660036 - 4660080
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcat 49  Q
    ||||||| ||||||||||||||||||||||| | ||||| |||||    
T  4660036 atattttttaaaatatatatgtcaacaaacagctatttttttcat 4660080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 27647842 - 27647886
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||  |||||| |||||||||||||||||||| ||||||||    
T  27647842 gagtaccaatacaccttaatttgcgggtgtaccgtagaagttccc 27647886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 30343102 - 30343232
Alignment:
Q  1 aatgatattttctaaaatatatat--gtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtac 98  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||| |||||     
T  30343102 aatgatattttctaaaatatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtagcggtaa 30343201  T
Q  99 accgtaatttgcgggtgtaccgtaaaagttc 129  Q
    |||||||||||||||||||||||| ||||||    
T  30343202 accgtaatttgcgggtgtaccgtagaagttc 30343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 33076105 - 33075991
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  33076105 atattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgta 33076006  T
Q  105 atttgcgggtgtacc 119  Q
    |||| ||||||||||    
T  33076005 atttacgggtgtacc 33075991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 47302257 - 47302386
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| ||||||||||||||||    
T  47302257 aatgatattttttaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtaccggtacac 47302355  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||| ||||||||||||| ||||||||    
T  47302356 cgtaatttacgggtgtaccgtagaagttccc 47302386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 11109727 - 11109596
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttctt-catnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtaca 99  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| |||       ||||| |||||||||||||||| |||| |||||||||||||||    
T  11109727 aatgatattttctaaaatatatatgtcaacaaacatcaattttctttcataaaaaaatgatagttaatttataaaaattttaagcgagagtaccggtaca 11109628  T
Q  100 ccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    || |||||||||||||||||||| ||||||||    
T  11109627 ccttaatttgcgggtgtaccgtagaagttccc 11109596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 3716602 - 3716731
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||||||||||||    
T  3716602 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcgagagtaccggtacac 3716700  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||| |  |||||||||| ||||||||    
T  3716701 cgtaatttccaagtgtaccgtagaagttccc 3716731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 55722755 - 55722883
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  55722755 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacac 55722852  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||||||||||||||||||||||||||    
T  55722853 cttaatttgcgggtgtaccgtaaaagttccc 55722883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 38836127 - 38836256
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||       | |||||||||||| |||| ||||||| |||||||||| |||||    
T  38836127 aatgatattttctaaaatatatatgtcaacaaacacctatttttttcataaaaaatt-ataattaatttacaaaagttgtaagcgagagtaccgatacac 38836225  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    |||||||||| ||||||||||| ||||||||    
T  38836226 cgtaatttgcaggtgtaccgtagaagttccc 38836256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 34280353 - 34280236
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||    
T  34280353 aatgatattttttaaaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacac 34280255  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    || ||||| ||||||||||    
T  34280254 cgcaatttacgggtgtacc 34280236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 52592074 - 52592199
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||  |||||||||||       ||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  52592074 atattttctaaaatatatatgtcaacaaacacttattttcttcataaaaaa-tgataattactttataaaaattgtatgcgagagtaccggtacaccgta 52592172  T
Q  105 atttgcgggtgtaccgtaaaagttccc 131  Q
    |||| ||| ||||||||| ||||||||    
T  52592173 atttacggatgtaccgtagaagttccc 52592199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 48579035 - 48578907
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  48579035 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacac 48578938  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | |||||| ||||||||||||| ||||||||    
T  48578937 cttaatttacgggtgtaccgtagaagttccc 48578907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 28037962 - 28038091
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||| |||||||| ||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  28037962 aatgatattttctaaaatatatatttcaacaaaaacctatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacac 28038060  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||||||| |||||||||||| ||||||||    
T  28038061 cttaatttgtgggtgtaccgtagaagttccc 28038091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 51435942 - 51435812
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||| |||||||||||||||||||||||||||||||| ||||  |||||       ||||| |||||||| ||||| ||||| ||||||| |||||||||    
T  51435942 aatggtattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttaaaaaaaatgtaaatgagagttccggtacac 51435843  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||||||||||||||||| || ||||||||    
T  51435842 cttaatttgcgggtgtaccatagaagttccc 51435812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 30539841 - 30539954
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||       ||||| |||||||||||||||| |||| ||||||||| ||||||||||    
T  30539841 atattttctaaaatatatatgtcaacaaacacctatttttttcataaaaaa-tgatagttaatttataaaaattataagcgagagtaccagtacaccgta 30539939  T
Q  105 atttgcgggtgtacc 119  Q
    |||| ||||||||||    
T  30539940 atttacgggtgtacc 30539954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 37519090 - 37518965
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||  |||||||||||       ||||| ||||||||||||||||||||| |||||||| | || || |||    
T  37519090 atattttctaaaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtactgatatactgta 37518992  T
Q  105 atttgcgggtgtaccgtaaaagttccc 131  Q
    |||| ||||||||||||| ||||||||    
T  37518991 atttacgggtgtaccgtagaagttccc 37518965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 37523306 - 37523181
Alignment:
Q  5 atattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgta 104  Q
    ||||||||||||||||||||||||||||||||  |||||||||||       ||||| ||||||||||||||||||||| |||||||| | || || |||    
T  37523306 atattttctaaaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtactgatatactgta 37523208  T
Q  105 atttgcgggtgtaccgtaaaagttccc 131  Q
    |||| ||||||||||||| ||||||||    
T  37523207 atttacgggtgtaccgtagaagttccc 37523181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 46041978 - 46042095
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||  |||||||||||||||     
T  46041978 aatgatattttctaaaatatatatgtcaacaaacacctattttcttcat-aaaaaatgatagttaatttataaaaattataaacgagagtaccggtacat 46042076  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||  ||||||||||    
T  46042077 cgtaattcacgggtgtacc 46042095  T

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Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 41759787 - 41759660
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  41759787 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacac 41759690  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttcc 130  Q
      |||||| ||||||||||||| |||||||    
T  41759689 tttaatttacgggtgtaccgtagaagttcc 41759660  T

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Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 43137500 - 43137383
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||| |        ||||| ||||||||| |||||||||||||||||||||| |||||    
T  43137500 aatgatattttttaaaatatatatgtcaacaaacacctattttcttta-caaaaaatgatagttaatttattaaaattgtaagtgagagtaccgatacac 43137402  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||  ||||||||||    
T  43137401 cgtaattcacgggtgtacc 43137383  T

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Target: chr4; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 27539194 - 27539311
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||       | ||| |||||||||||||||| ||||  |||||||||||||||    
T  27539194 aatgatattttctaaaatatatatatcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattataagcaagagtaccggtacac 27539292  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    | |||||| ||| ||||||    
T  27539293 cataatttacggatgtacc 27539311  T

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Target: chr4; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 37855398 - 37855526
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||          ||| | ||||||||||||||||||||| ||| ||||||||||||    
T  37855398 aatgatattttctaaaatatatatgtcaacaaacacttattttctttcataaaaaatgacagttaatttataaaaattgtaagcgagggtaccggtacac 37855497  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttc 129  Q
    | |||||| | | ||||||||| ||||||    
T  37855498 cttaatttacagatgtaccgtagaagttc 37855526  T

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Target: chr4; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 53388975 - 53388848
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||  |||||||||||||| |||||  ||||||||||||||||    
T  53388975 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaaatgatggttaatttataaaaa-tgtaaacgagagtaccggtacac 53388877  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttc 129  Q
    | |||||||| | |||||| || ||||||    
T  53388876 cttaatttgcagatgtaccatagaagttc 53388848  T

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Target: chr4; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 14802989 - 14803084
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggt 96  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||    
T  14802989 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggt 14803084  T

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Target: chr4; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 52589349 - 52589466
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||       | ||| |||||||||||||||| |||   |||||| ||||||||    
T  52589349 aatgatattttctaaaatatatatgtcaataaacacctattttcttcataaaaaatt-atagttaatttataaaaattataaacaagagtatcggtacac 52589447  T
Q  101 cgtaatttgcgggtgtacc 119  Q
    |||||||| || |||||||    
T  52589448 cgtaatttacgagtgtacc 52589466  T

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Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 31908774 - 31908846
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 129  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  31908774 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttc 31908846  T

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Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 9858587 - 9858654
Alignment:
Q  63 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||||||||||  ||  |||| |||||||||||||||| |||||||| ||||||||||| |||||||    
T  9858587 ttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcaggtgtaccgtagaagttcc 9858654  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 53695430 - 53695384
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccccc 133  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  53695430 gagtaccggtacaccttaatttgcaggtgtaccgtagaagttccccc 53695384  T

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Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 36091390 - 36091463
Alignment:
Q  57 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 130  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||| | ||||||||||| |||||||    
T  36091390 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttacaggtgtaccgtagaagttcc 36091463  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 31681542 - 31681592
Alignment:
Q  81 aagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||| |||||| |||||||| |||||| ||||||||||||| ||||||||    
T  31681542 aagtgggagtactggtacaccttaatttacgggtgtaccgtagaagttccc 31681592  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 46215816 - 46215772
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||    
T  46215816 gagtaccggtacacattaatttgcgagtgtaccgtagaagttccc 46215772  T

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Target: scaffold0077 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 48287 - 48415
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||    
T  48287 aatgatattttctaaaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacac 48384  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||| |||||||||||||||| ||||||||    
T  48385 cttaaattgcgggtgtaccgtagaagttccc 48415  T

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Target: scaffold0077; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 58124 - 58170
Alignment:
Q  85 gagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  58124 gagagtaccggtacaccttaaattgcgggtgtaccgtagaagttccc 58170  T

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Target: scaffold0005 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 36738 - 36643
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggt 96  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||    
T  36738 aatgatattttctaaaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggt 36643  T

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Target: scaffold0283 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6516 - 6644
Alignment:
Q  1 aatgatattttctaaaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 100  Q
    ||||||||||| ||||||||||||||||||||||||| ||||   ||||       || ||| | |||||||||||| ||||  ||||||||||||||||    
T  6516 aatgatattttgtaaaatatatatgtcaacaaacacctatttctgtcataaggaa-tggtaagtgatttataaaaat-gtaaccgagagtaccggtacac 6613  T
Q  101 cgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    | ||| |||||||||||||||| ||||||||    
T  6614 cttaaattgcgggtgtaccgtagaagttccc 6644  T

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Target: scaffold0625 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 6310 - 6266
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  6310 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 6266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 29607 - 29651
Alignment:
Q  87 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 131  Q
    ||||||||||||||| |||||||| ||||||||||| | ||||||    
T  29607 gagtaccggtacaccttaatttgcaggtgtaccgtagatgttccc 29651  T

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