View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4538_low_8 (Length: 364)
Name: NF4538_low_8
Description: NF4538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4538_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 41013323 - 41012985
Alignment:
| Q |
20 |
gctaagtcctataaaaagatatagggcactaaaaaacatcacccctgactgaactctaaaaactgcatatatggacatgactcaaataaatataaaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41013323 |
gctaagtcctataaaaagatatagggcactaaaaaacatcacccctgactgaactctaaaaactgcatatatggacatgactcaaataaatataaaaaat |
41013224 |
T |
|
| Q |
120 |
atttacattagtacttagtttg----atctaaactaacagagcaccgcatacaataatacgtttaaaatacnnnnnnnnnnttaaactagctaaatttaa |
215 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
41013223 |
atttacatgagtacttagtttgtttgatctaaactaaaagagcaccacatacaataatactttgaaaatacaaaaaaaaaaataaactagctaaatttaa |
41013124 |
T |
|
| Q |
216 |
taaacttgta-gtattctaatataatagaccaaatgaggaacttccatgaaactcatcatgaacaagatttgcagcaactatggaattaaagatattatt |
314 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41013123 |
taaacttgtaagtattctaatataatagaccaaatgaggaacttccttgaaactcatcatgaacaagatttgcagcaactatggaattaaagatattatt |
41013024 |
T |
|
| Q |
315 |
ccatttttcatcttcttcatcctcttcctcccctccacc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41013023 |
ccatttttcatcttcttcatcctcttcctccccaccacc |
41012985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University