View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4540-Insertion-1 (Length: 985)

Name: NF4540-Insertion-1
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4540-Insertion-1
NF4540-Insertion-1
[»] chr7 (14 HSPs)
chr7 (15-983)||(41900992-41901965)
chr7 (638-984)||(41895939-41896303)
chr7 (6-207)||(41893556-41893757)
chr7 (42-207)||(41896732-41896897)
chr7 (320-405)||(41896542-41896627)
chr7 (723-844)||(41891125-41891246)
chr7 (320-404)||(41829067-41829151)
chr7 (320-404)||(41885561-41885645)
chr7 (320-388)||(41891821-41891889)
chr7 (750-812)||(34454209-34454271)
chr7 (320-372)||(34453750-34453802)
chr7 (504-571)||(41896394-41896461)
chr7 (753-826)||(41885112-41885185)
chr7 (750-817)||(41829477-41829544)


Alignment Details
Target: chr7 (Bit Score: 847; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 15 - 983
Target Start/End: Complemental strand, 41901965 - 41900992
Alignment:
Q  15 catgatgatcacaaaagttcagaagaaccagaattgggtctttctcttgagaaacttaatctcggacctaagaagaaattgcttattatgaaccttaacg 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41901965 catgatgatcacaaaagttcagaagaaccagaatttggtctttctcttgagaaacttaatctcggacctaagaagaaattgctaattatgaaccttaacg 41901866  T
Q  115 gatttcttctccatagagctcatgtttgtgataagaaagcaattccaaagtctcgaactgctgattacaaatatcgttactttctacgtaatattttctc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41901865 gatttcttctccatagagctcatgtttgtgataagaaagcaattccaaagtctcgaactgctgattacaaatatccttactttctacgtaatattttctc 41901766  T
Q  215 aactcaacatacactttatatttctttttattatctgctttatataatacttgaatgaattttaattaatgactattaattagtcgtaaatttggtgcag 314  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41901765 aactcaacatacactttatatttctttttattatatgctttatataatacttgaatgaattttaattaatgactattaattagtcggaaatttggtgcag 41901666  T
Q  315 cttttaagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatctt 414  Q
     |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41901665 tttttaagaggccatttagcgaagaatttattaaattctgcttggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatctt 41901566  T
Q  415 ctatttcatttcttcccttttttcctctttaaatttgattaattacttgatcttaaactgtatcctttttattgtaattgataattaggcataatattga 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41901565 ctatttcatttcttcccttttttcctctttaaatttgattaattacttgatcttaaactgtatcctttttattgtaattaataattaggcataatattga 41901466  T
Q  515 tgatgctttagcctgtgccattggagaattgaaaaacaagctactatttgtttgggttcgtatactcgcttatgctgtaatatacataaa---atttcct 611  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||   |||||||    
T  41901465 tgatgctttagcctgtgccatcggagaattgaaaaacaagctactatttgtttgggttcgtatactcgcttatgctgttttatacataaaatcatttcct 41901366  T
Q  612 aacaactctattcgttaattaatgtgtttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaagaagc 711  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  41901365 aataactctattcgttaattaatgtgtttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggagaacaaccagaagc 41901266  T
Q  712 cccnnnnnnncaaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaa 811  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41901265 ccctttttttcaaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccgtattctgcttccaataccttgctaattgatgacaaaccatacaa 41901166  T
Q  812 gtccttgcttaatccggtagttcacttgtttttactaatattg-tttttaaattaatgttaacagctttaatcacctcaaattgcagcccaatacatcaa 910  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  41901165 gtccttgcttaatccggtagttcacttgtttttactaatattgttttttaaatcaatattaacagctttaatcacctcaaattgcagcccaatacatcaa 41901066  T
Q  911 tttttaccgagccgtatgatccagtggacaagcgtgacaaggcattgggttag-acttatgcttcttatatttt 983  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  41901065 tttttaccgagccgtatgatccagtggacaagtgtgacaaggcattgggttagaacttatgcttcttatatttt 41900992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 638 - 984
Target Start/End: Complemental strand, 41896303 - 41895939
Alignment:
Q  638 tttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaagaagccccnnnnnnncaaggaactgaaagaa 737  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || |       ||| ||||||||| ||    
T  41896303 tttcatatatttattttaggatcaacataaatgtagagattctggttttaaatccttggagaacaataagaaacctctctttttcaaagaactgaaaaaa 41896204  T
Q  738 gtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatccggtagttcact 837  Q
    |||||| ||| | |||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| || |||||||||||| ||||||    
T  41896203 gtgtgggacactatcaagaaaggaggaccgtattctgcttcaaatacgttgctgatcgatgacaaaccatacaagtctttccttaatccggtaattcact 41896104  T
Q  838 tgtttt------tactaatat-------tgtttttaaat-taatgttaacagctttaatcacctcaaattgcagcccaatacatca---atttttaccga 920  Q
    ||||||      || ||||||       ||||||| |||  ||| |||||||||||||||||||||||||||||||||||||||||   |||||| |  |    
T  41896103 tgtttttctttatattaatataaaaaactgtttttgaatcaaatattaacagctttaatcacctcaaattgcagcccaatacatcaattatttttcctaa 41896004  T
Q  921 gccgtatgatccagtggacaagcgtgacaaggcattgggttag-acttatgcttcttatatttta 984  Q
    | | |||||||| | |||||||  |||||||||| |||||||| |||||||||||||||||||||    
T  41896003 gtcatatgatcctgaggacaaggatgacaaggcactgggttagaacttatgcttcttatatttta 41895939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 41893757 - 41893556
Alignment:
Q  6 catgatgaccatgatgatcacaaaagttcagaagaaccagaattgggtctttctcttgagaaacttaatctcggacctaagaagaaattgcttattatga 105  Q
    |||| ||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||   | ||||||||||||||||| |||||||    
T  41893757 catgttgaccttgatgatcacaaatgttcagaagaactagagttgggtctttctcttgagaaactgaatcatagtcctaagaagaaattgctcattatga 41893658  T
Q  106 accttaacggatttcttctccatagagctcatgtttgtgataagaaagcaattccaaagtctcgaactgctgattacaaatatcgttactttctacgtaa 205  Q
    || |||| |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||    
T  41893657 acattaatggatttcttctccacagagctcatattagtgataagaaagcaattccaaagtctcgaactgctgatcacgaatatcgttactttctccgtaa 41893558  T
Q  206 ta 207  Q
    ||    
T  41893557 ta 41893556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 41896897 - 41896732
Alignment:
Q  42 ccagaattgggtctttctcttgagaaacttaatctcggacctaagaagaaattgcttattatgaaccttaacggatttcttctccatagagctcatgttt 141  Q
    ||||||||||  |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||      
T  41896897 ccagaattggacctttttcttgagaagctgaatctcggacctaagaagaaattgcttattatgaaccttaatggatttcttctccatagagctcgtgtca 41896798  T
Q  142 gtgataagaaagcaattccaaagtctcgaactgctgattacaaatatcgttactttctacgtaata 207  Q
     ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||    
T  41896797 ctgacaagaaagcaattccaaagtctcggaccgctgattacaaatatcgttactttctccgtaata 41896732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 41896627 - 41896542
Alignment:
Q  320 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaac 405  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||  | ||||||||||||||||||||||||||    
T  41896627 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaac 41896542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 723 - 844
Target Start/End: Complemental strand, 41891246 - 41891125
Alignment:
Q  723 aaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgctta 822  Q
    |||||||| |||||||||||| |   ||||||||||||| | |||||||||||||| ||||||||| | ||||||| || |||||||| |||||| ||||    
T  41891246 aaggaactaaaagaagtgtgggatgatgtcaagaaaggatgtccatattctgcttcaaataccttgatgattgatgccagaccatacaggtccttcctta 41891147  T
Q  823 atccggtagttcacttgttttt 844  Q
    ||||| || | ||| |||||||    
T  41891146 atccgttaatgcacatgttttt 41891125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 41829067 - 41829151
Alignment:
Q  320 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 404  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41829067 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41829151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 320 - 404
Target Start/End: Complemental strand, 41885645 - 41885561
Alignment:
Q  320 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa 404  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||  | ||| ||||||||| | |||||||||    
T  41885645 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa 41885561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 41891889 - 41891821
Alignment:
Q  320 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttct 388  Q
    ||||| |||||||  ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  41891889 aagagaccatttactgaagaatttatgaaattctgcttagaaagatttgaagtgggcctctggtcttct 41891821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 750 - 812
Target Start/End: Original strand, 34454209 - 34454271
Alignment:
Q  750 gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaag 812  Q
    |||||||||||||| |||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  34454209 gtcaagaaaggaggtccatattctgcttctaatactttgatgattgatgacaaaccatacaag 34454271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 34453750 - 34453802
Alignment:
Q  320 aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagt 372  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  34453750 aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagt 34453802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 504 - 571
Target Start/End: Complemental strand, 41896461 - 41896394
Alignment:
Q  504 cataatattgatgatgctttagcctgtgccattggagaattgaaaaacaagctactatttgtttgggt 571  Q
    |||||| |||||| ||||||||| ||||| ||||| || | |||||||||||||||||||||||||||    
T  41896461 cataatgttgatggtgctttagcatgtgctattggcgattcgaaaaacaagctactatttgtttgggt 41896394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 826
Target Start/End: Complemental strand, 41885185 - 41885112
Alignment:
Q  753 aagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtccttgcttaatcc 826  Q
    |||||| |||| |||||||||||||| ||||| ||| | |||||||||||| |||| ||||||||  |||||||    
T  41885185 aagaaaagaggcccatattctgcttctaatactttgatgattgatgacaaagcatataagtccttcattaatcc 41885112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 817
Target Start/End: Original strand, 41829477 - 41829544
Alignment:
Q  750 gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagtcctt 817  Q
    ||||||||||||||  |||||||| |||| ||||| ||| | |||||||||||| |||| ||||||||    
T  41829477 gtcaagaaaggaggctcatattctccttctaatactttgatgattgatgacaaagcatataagtcctt 41829544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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