View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-11 (Length: 440)
Name: NF4540-Insertion-11
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 34975175 - 34974742
Alignment:
| Q |
7 |
aggtacacctgcaaaaataataaaaagatctcatgttactaggtaacttatggtttatggatatgttatggtacaattgctaactataaatgatattttg |
106 |
Q |
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| T |
34975175 |
aggtacacctgcaaaaataataaaaagatcccatgttactaggtaacttatggtttatggatatgttatggtacaattgctaactataaatgatattttg |
34975076 |
T |
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| Q |
107 |
tgtgagtgacaggccataaggtatattgagtacgattcctcattcagtgatgaggagaaacagcaggccaaagcattgaaaatttcatgcaatcttaatg |
206 |
Q |
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| T |
34975075 |
tgtgagtgacaggccataaggtattttgagtacgattcctcattcagtgatgaggagaaacagcaggccaaagcattgaaaatttcatgcaatcttaatg |
34974976 |
T |
|
| Q |
207 |
acgcggcatgtaagttgaaactcaaggactacaaacaggcagagaagttgtgcacaaaggttagtttatgaaatttccttttctgcttatttttgttata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34974975 |
acgcggcatgtaagttgaaactcaaggactacaaacaggcagagaagttgtgcacaaaggttagtttatgaaatttccttttctgcttatttttgttata |
34974876 |
T |
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| Q |
307 |
tttctgtagttgaattcaaagggaaacagagtgaaaaccattgacttaagaggattttgttttaatctgtaggtgttagagcttgatagtagaaacgtag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34974875 |
tttctgtagttgaattcaaagggaaacagagtgaaaaccattgacttaagaggattttgttgtaatctgtaggtgttagagcttgatagtagaaacgtaa |
34974776 |
T |
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| Q |
407 |
aagccctataccgaagggcacaagcatatattca |
440 |
Q |
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| T |
34974775 |
aagccctataccgaagggcacaagcatatattca |
34974742 |
T |
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