View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-12 (Length: 378)
Name: NF4540-Insertion-12
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 15674014 - 15674267
Alignment:
| Q |
7 |
accatgtatgtatttgttactaaaggtttcatcattgatatattggttttaatttctggattcaaggtggaatcaaccaagttgaataatgcataattta |
106 |
Q |
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| T |
15674014 |
accatgtatatatttgttactaaaggtttcatcattgatatataggttttaatttctggattcaaggtggaatcaaccaagttgaataatgcataattta |
15674113 |
T |
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| Q |
107 |
ttattgaagggctctcatttgggtgggaaacattgaatttaatttaatgtttttgactaatgagcaaaggccaaagttattcaatcttttgagtggagtt |
206 |
Q |
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| T |
15674114 |
ttattgaagggctctcatttgggtgggaaacattgaatttaatttaatgtttttgactaatgagcaaaggccaaagttattcaatcttttgagtggagtt |
15674213 |
T |
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| Q |
207 |
tgtatatgatagtgataaggacattaccattaaggccaaaccaaagtggccaat |
260 |
Q |
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| T |
15674214 |
tgtatataatagtgataaggacattaccattaaggccaaaccaaagtggccaat |
15674267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 15674316 - 15674384
Alignment:
| Q |
310 |
gtactagagatatttggtctattttactcttatttgatgaatgaattattataatcaaacctcttaacc |
378 |
Q |
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| T |
15674316 |
gtactagagatatttggtctattttactcttatttgatgaatgaattattataatcaaacctcttaacc |
15674384 |
T |
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