View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-13 (Length: 371)
Name: NF4540-Insertion-13
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 45060647 - 45060899
Alignment:
| Q |
8 |
cagccctctttctcagctcctccataatgccattgtcagggtttatctccattgtcttcttgctagacatgtaaccactcatgctgctatctctcagtgc |
107 |
Q |
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| T |
45060647 |
cagccctctttctcagctcctccataatgccattgtcagggttgatctccattgtcttcttgctagacatgtaaccactcatgctgctatctctcagtgc |
45060746 |
T |
|
| Q |
108 |
ttgagccttcatgatcctttccatgtttgcactccatccatattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45060747 |
ttgagccttcatgatcctttccatgtttgcactccatccatattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttt |
45060846 |
T |
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| Q |
208 |
tcaactttgtctcccaatacctccttcattgtcctgcacagatcctcaaacgat |
261 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45060847 |
tcaactttgtct-ccaatacctccttcattgtcctgcacagatcctcaaacgat |
45060899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 45060935 - 45061009
Alignment:
| Q |
297 |
actttcctcatccaacttcaacccttcctttgtagcagataccaatttctttccatcatactccttcagttggcc |
371 |
Q |
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| T |
45060935 |
actttcctcatccaacttcaacccttcctttgtagcagataccaatttctttccatcatactccttcagttggcc |
45061009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 18622217 - 18621972
Alignment:
| Q |
12 |
cctctttctcagctcctccataatgccattgtcagggtttatctccattgtcttcttgctagacatgtaaccactcatgctgctatctctcagtgcttga |
111 |
Q |
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| T |
18622217 |
cctcttcctcagttcctccataatgccattatcagggttgatttccatagttttcttactagacatgtagcctgccatgctgctgtccctcagagcttga |
18622118 |
T |
|
| Q |
112 |
gccttcatgatcctttccatgtttgcactccatccatattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttttcaa |
211 |
Q |
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||||||||||| || |||||||| ||| |||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||| || | |
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| T |
18622117 |
gccttcatgattctctccatgttagcagaccatccgtattcgccggtcaccaaacagcatggagaatcaacaatcctgtcagagacaactaccttctcca |
18622018 |
T |
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| Q |
212 |
ctttgtctcccaatacctccttcattgtcctgcacagatcctcaaa |
257 |
Q |
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|||| |||||||| | ||||||||| |||||| ||||||||||| |
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| T |
18622017 |
ctttatctcccaagatctccttcatgaccctgcagagatcctcaaa |
18621972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 18621930 - 18621861
Alignment:
| Q |
299 |
tttcctcatccaacttcaacccttcctttgtagcagataccaatttctttccatcatactccttcagttg |
368 |
Q |
| |
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| T |
18621930 |
tttcatcatccagcttcaatccttcctttgtagctgaaaccaatttctttccgtcgtactctttgagttg |
18621861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 42165070 - 42165284
Alignment:
| Q |
19 |
ctcagctcctccataatgccattgtcagggtttatctccattgtcttcttgctagacatgtaaccactcatgctgctatctctcagtgcttgagccttca |
118 |
Q |
| |
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|||||||||||||||||| ||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||||| |||| || || ||||||| |
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| T |
42165070 |
ctcagctcctccataatgggattctcagggttgatttccattgtcttcttgcttgacatgtaaccagccatgctgctatccctcaaagcctgtgccttca |
42165169 |
T |
|
| Q |
119 |
tgatcctttccatgtttgcactccatccatattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttttcaactttgtc |
218 |
Q |
| |
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||||||| |||||||| ||| |||| ||||| ||||||||||| | |||||| ||||| ||||||| | ||||| ||||| || || ||||| ||||| |
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| T |
42165170 |
tgatcctctccatgttggcagtccaaccatactcaccagtcactagacagcaaggagagtccacaactcggtcagaaacaaccactttctcaaccttgtc |
42165269 |
T |
|
| Q |
219 |
tcccaatacctcctt |
233 |
Q |
| |
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||||| || ||||| |
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| T |
42165270 |
gcccaacacttcctt |
42165284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 42175711 - 42175925
Alignment:
| Q |
19 |
ctcagctcctccataatgccattgtcagggtttatctccattgtcttcttgctagacatgtaaccactcatgctgctatctctcagtgcttgagccttca |
118 |
Q |
| |
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|||||||||||||||||| ||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||||| |||| || || ||||||| |
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| T |
42175711 |
ctcagctcctccataatgggattctcagggttgatttccattgtcttcttgcttgacatgtaaccagccatgctgctatccctcaaagcctgtgccttca |
42175810 |
T |
|
| Q |
119 |
tgatcctttccatgtttgcactccatccatattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttttcaactttgtc |
218 |
Q |
| |
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||||||| |||||||| ||| |||| ||||| ||||||||||| | |||||| ||||| ||||||| | ||||| ||||| || || ||||| ||||| |
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| T |
42175811 |
tgatcctctccatgttggcagtccaaccatactcaccagtcactagacagcaaggagagtccacaactcggtcagaaacaaccactttctcaaccttgtc |
42175910 |
T |
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| Q |
219 |
tcccaatacctcctt |
233 |
Q |
| |
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||||| || ||||| |
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| T |
42175911 |
gcccaacacttcctt |
42175925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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